Paramisgurnus dabryanus (large-scale loach): 135721491
Help
Entry
135721491 CDS
T10799
Symbol
setx
Name
(RefSeq) probable helicase senataxin isoform X1
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
pdab Paramisgurnus dabryanus (large-scale loach)
Brite
KEGG Orthology (KO) [BR:
pdab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pdab03021
]
135721491 (setx)
Enzymes [BR:
pdab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
135721491 (setx)
5.6.2.5 RNA 5'-3' helicase
135721491 (setx)
Transcription machinery [BR:
pdab03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
135721491 (setx)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SEN1_N
AAA_19
AAA_30
Viral_helicase1
UvrD-helicase
AAA_16
AAA_22
GLF
UvrD_C_2
NAT10_TcmA_helicase
nSTAND3
Motif
Other DBs
NCBI-GeneID:
135721491
NCBI-ProteinID:
XP_065099837
LinkDB
All DBs
Position
18:5144747..5171937
Genome browser
AA seq
2424 aa
AA seq
DB search
MMEKCMWCTTSLDVEGDEAIRTLLRRYSSGKLSEREMDSLNEDLSCCMECVVEYHRSREK
VPELHKVLWEMEKTRLLRVLGSVLDQELDEDDDLFIIEDDGVELVSKMSPIEFQNSLRFP
LFEVLKYPYLLCYRELCDMAVKALCMLQDMNHSLAVFEKYQGTYMLLVHPNEKVRRWAID
AAKTMKSVDRDSYYDLQEIFTCMFYVIELGFCVDLPASDPDSYAGGSVPRLPSHLYDSHN
KKNYWLGICMLLTQLSAEAMDSLFMGQFNQFNIPLCILNTMDELKHEDDPASDPFWPALQ
CFMVILDRLGSKIWGQVDPILAFQTITGAASYTAEIRNIQKKTTGSKVKVELDSDDNMVT
CSQMVYDCYASGKKSQASSSSSSSCISNNYVIYEDMQSLVNVLDSEMGQSMRVYGSTFLW
FIPFVRSLMELAELNASYISEVIHYLCDKIQINRHMLTGQTNVCDRVTEFFTRILIQIVE
LHFNEGGMGKLYRCAPKWVEVIVMCSVLPDEAFSAGLPDMMGGIHRVSSTSNTLGVVGRL
PASGDGVGAILVGCITLIRLLLKEGIRSGSDPRSTHYLNLLNKQLRRVPNARWKLTKSES
DELERCLKNIVRSMPARPASPASTVSFPSTSSIEAPTNAPLVKNTNFHKLQHEDSEAGPS
RAGDASAPIKQETLYDCLSDEDFFSGFESLIEAKKEPSDPVVSDPGPAVELAHIKPDLGV
LQEIRSRLNNNTNLSKIKAIAQGKPGKPEIEQVGSGQKEPMSSHPLTLQPVTTSKQAATT
KKCGLRSAVDDDEDDEPLDIRRDRLRKSWKLETSDSEVDCKDDGQKHTISTSKESFTTII
ISDDETSENDEEPTKKVLGPNDETPTLQNKSPVLPESPGRDYDDLSESQVFEFETQQYVA
SAWEDFEASVVTKPKSNSEIKPQVAPVPDEGSPSWSSETEAIQDEDIERACQQAEEKIKQ
QQQPQKPSVSCASSSSSKISPVEYRDQFKQPQILPVKNQKTVQSEKKDIVQSKKPLIIEA
LAHKVRRHSLKRGFSSPEVEEPPSTSVSTSGLSSAATSSSYFSASASRGIPAVVPPKKVR
KAVEPESTAERLGLKKKERKAFDLSQRSLDSVAKLRGHGQKVHVEPQQVKKRMSSTKSSP
KKRLVKSNKKLLASQEMQFIRQSRDKRQRPAGVSPTTLAPKPTKSTQPGEMHLSKSMVAE
QEDFDFLPCPQEDPDHQQNNKRPATEMKTNHTSESCDARDDVDGHNKTESKYFRSSESVD
VAVNTERNTATKDAKEEEEDEWMFLTQMEPTDMELCSQMEQLEENDERFFHTQRDPVDMD
LDDDVGEPETPVQLALPTHKPLPSFQDPNSFKRIDSNNDNLFLKPGMSPMSQKKAKPSTT
KIYAPSSRSASLVLEMEKGDKPPPVVNVAKAKNAQAAPAMPPPKMTPPVLPPQFAQPLPS
AQFARPLPPSHSTRPLSSKPILRPLSHAPKSVTSTKISSTSEPPSYKTYQRPEAPVNKPV
PNMDQSQKFDVSVLTQAILKWEFRMFDNFKTFGSPDDLCQLPLKEVPVKFTSYLEYFNTL
YPLLLINAFEEMVNEWLKQGRIEVLAQVQGMEYSNRTASASFVAKLSREQERRQLYPKED
DLVLLHLPENTGAYAHDEPAEHHVLPHFGYVSRSSVSNRGPGPTVNMTIQTRGNVSSVNT
QSVRCEVIGSLISTFREFRALCLLRNGPMLRPLLAPHVSYFKHSQDIQLKMDAPEYNIDQ
SRAIDCGLAMIKRTQKTPKFLLIHGPPGTGKSKTIGGLLYKLLSSDINSAALGGNFPSKT
RRTRVLLCAPSNAAIDSLMKKVIVVFKEKCRNINAPQGNCGDINLVRLGSEKTISKILKP
FSLDHQIRARAQRTQQTVEADIQKQKELLDQDIEVVSKLCAKAQKGSSEFKRFTERKMEL
LREIEGLSRKIKECRGKRQESQALVLQNAHVICCTLSTSGSTVLENAFRRLGHEPFSCVI
IDEASQAKETETLIPMLYRCPAVILVGDPNQLPPTVVSQKAKELGYDQSLMVRLCKSLQS
NAQPSPVFLLSMQYRMHPDICEFPSKYIYNNTLKNDWQGQCRQYEEEERTLTVSELRLIR
LLRGRCECETALKRCSFSWPFKSYRVFDVTDGRENKEGDSFSNNKEVKLVLMLLKLLSEK
QSVRVGVITPYNAQKRRIMDAMRKPDFECKHLQVEVDTVDGFQGREMDCIIVSCVRASSE
TGSIGFLGNRQRLNVTITRAKFSLFILGHLRTLREQSDWGALIDDARKRGNIIKTQDRDY
QSDVRKILKNDSLSRSLSHPPVGRPSTVTSPIPHVPMETGRASTSRPHPSASLLRQNSMP
RPIPLDCPRDPQITERPTDPRFAERRPIGEQRQDVDGRGLSMSHQRPTDPRFTERRPFRD
DYRNAAHSSRHTSKHFPSPKRHRR
NT seq
7275 nt
NT seq
+upstream
nt +downstream
nt
atgatggagaagtgtatgtggtgtaccacgtcgttggatgtggagggagatgaggccatc
agaaccctgttacgtcgctacagttcaggaaaactttctgaacgtgagatggattctcta
aatgaagacctcagctgttgtatggagtgtgtggtggagtatcacagatcaagagaaaaa
gtccctgaactacacaaggttttgtgggaaatggagaaaactcgactactgcgtgtgttg
ggatctgtgttggatcaggagctggatgaggatgatgatctctttatcattgaagatgat
ggtgtcgaactcgtgtcaaagatgtcacctatagaattccagaacagtcttcgcttcccg
ctgtttgaagttctgaaatatccgtacctgctttgttaccgtgagctgtgtgacatggcg
gtgaaggctttatgtatgctacaggacatgaatcattctttggccgtgtttgagaagtat
caaggaacatatatgctgcttgttcatcccaacgaaaaggtgcgacgatgggcaatcgat
gcagcaaagacaatgaagagtgtggaccgggactcctactatgaccttcaagaaattttc
acttgcatgttttatgtcattgagctgggattttgtgtggatttaccggcttcagatcct
gattcttatgcaggcggttcagtgccgagactgccctctcacctctatgattcacacaat
aagaagaactactggctaggcatctgtatgttactaacacagctcagcgccgaagcaatg
gactctctgtttatggggcagtttaatcagtttaatatccctctctgcatacttaacaca
atggatgagttaaaacatgaggatgacccggcatctgacccgttctggccagcccttcag
tgttttatggtaattctggaccgtctcggttctaagatctggggtcaggtcgaccctatt
ttggcttttcagaccataactggagcagccagctatactgcagaaataagaaatatccag
aagaaaaccacagggagtaaggttaaggtggagctggattctgatgacaatatggtgact
tgcagtcagatggtatatgactgttatgcctcagggaaaaaaagccaagcgtccagctca
tcttccagcagttgtattagcaacaactatgtgatctatgaagatatgcagtccctagtc
aacgtgctcgattcagagatgggtcagagcatgcgtgtctatggcagcacttttctgtgg
ttcattccatttgttcgctccttaatggaacttgcggagctcaatgcctcctacattagt
gaggtcattcactacctttgtgataagatacaaattaatcgacacatgctgactggacag
acaaacgtgtgcgacagagtgactgagtttttcacccgcatccttattcagattgttgag
ctacattttaatgaaggaggaatgggcaaactttatcgctgtgcccccaagtgggtggaa
gtgattgtcatgtgtagtgtcctgcctgatgaagcattcagtgctggattaccagacatg
atgggtgggattcacagagtgagttcaacctcaaacacacttggtgtagttggcagactg
cctgcatctggagatggtgttggtgccatacttgtgggctgcatcactctgattcgacta
ctgctgaaggaagggatacgatccggatctgacccacgttctacacattatttgaatttg
cttaataagcagttgcgcagagttccaaatgcacgttggaaactcacaaaatctgaatca
gatgagcttgaacgatgtttaaaaaatattgttcggtcaatgccagcaagacctgcttct
ccagcttctactgtgtccttcccttctacttcatccatcgaggcaccaacaaacgctcct
cttgtcaaaaatacaaacttccataaactgcagcatgaagactcagaagcgggtccaagc
agagcaggagatgcgtctgctcctatcaaacaggagacactttatgattgcttgtcagat
gaggatttcttcagtggttttgaaagcctaatagaggctaagaaggaacccagtgatcct
gtggtttcagatccgggacctgctgttgagttggcacacattaaaccagacctgggagta
ctgcaggaaattcgatccagattaaataataatacgaatttatcaaagattaaggctata
gcccaagggaagcctggtaaaccagagattgaacaagtcgggagtggccaaaaagaacct
atgagctctcatcctttaaccttgcaacctgtgacgacttcaaaacaggcagcaactaca
aagaaatgtggtttaagatctgcggtagatgatgatgaggatgatgaacctcttgatatc
agaagagatcgtctgagaaaatcctggaagcttgaaacaagtgattctgaagtagactgt
aaggatgatggacaaaagcataccataagcacctcaaaggaaagttttactaccattatt
atctctgacgatgaaacttcagagaatgatgaggagccaacaaaaaaggtccttgggccc
aatgatgagactcctacactgcagaataaatctccagtcttacccgaaagtccaggccgt
gactatgatgatctcagtgaatcacaggtttttgaatttgagacccagcaatatgtggca
tctgcttgggaggattttgaagcatcagttgtgacgaagcctaaatcgaactctgaaatc
aaaccacaagtggctcctgttcctgatgaaggttctccctcatggagttcagagactgaa
gcaattcaagatgaggacattgagagggcctgtcagcaagctgaagaaaagattaaacaa
cagcagcaacctcaaaagccaagtgtttcatgtgcatcttcctcatccagcaaaatcagc
cctgtagagtacagggatcaattcaaacaaccacaaattctgccagttaaaaaccagaag
actgtacagtctgaaaagaaagacattgtgcagtctaaaaaaccattaataattgaggcg
cttgctcataaagtcaggcgccattccttgaagcgcggcttttcatctcccgaagttgag
gaaccaccttcaacttctgtatccacatcggggttgtcatctgccgcaacatcttcctct
tatttttcggcctctgcctcacgtggcatccctgctgtagttcccccaaagaaggttcgt
aaagctgttgagcccgaatcaacagctgaacgtttaggattgaagaaaaaagaaaggaag
gcttttgatctttcacagcgttccctggacagtgtcgctaaactgcggggccatggccag
aaagtgcatgtggagccacaacaggtaaaaaagcgaatgagcagcactaagtcctctcca
aagaaacgtttggtaaaaagcaacaagaaacttttggcatcacaagaaatgcagttcatc
aggcaaagtcgtgataagcgtcagaggccagcaggggtatcccccacaacgttggctccc
aaaccaacaaagagcacccaacctggggaaatgcacctatcaaaatctatggttgcagaa
caagaggatttcgattttcttccctgccctcaggaagatcctgaccatcaacagaataat
aaaaggccggccacagaaatgaaaacgaaccataccagtgaaagctgtgacgctagagat
gatgtcgatggacataacaagactgagtcaaagtacttcagaagcagtgagtctgttgat
gttgcggtcaacacagagaggaacacagccactaaggatgcaaaagaagaggaggaggat
gaatggatgttcctcactcaaatggaacccaccgacatggaactatgctctcagatggag
caattggaagagaatgatgaaagatttttccatacccagagagatcctgtggacatggac
ctggatgatgacgttggtgaaccagaaacccccgtgcagctggcattgccaacacacaaa
cctttgccctcttttcaagatccaaacagtttcaaacgtattgattccaataatgataat
ttattcctaaagcctgggatgtccccgatgtcacagaaaaaggccaagccttccaccaca
aaaatatatgcccccagctcacgcagtgcctcgcttgtcctggaaatggaaaaaggggat
aagccgcctcctgtggttaatgttgctaaagctaagaatgcccaagcggcaccagcgatg
ccacccccaaagatgacccctcctgtgcttcctccacaattcgcacagccattgccttct
gcacaatttgcacgcccgttgccgccttcacattccacacggccgttgtcttcaaaaccg
attcttcgaccactgagccatgccccaaagtcagtcactagtactaaaataagctctaca
tctgaaccgccatcttacaaaacataccagagacctgaagctccagttaacaaaccagtg
cccaatatggatcagagccagaagtttgacgtttcggtcttgacacaagctattcttaaa
tgggagtttcgtatgtttgacaatttcaaaacatttggcagtccagatgatctatgccag
ctgccactgaaggaggtgccagttaaattcactagctacctagagtacttcaataccctg
taccctctgctgctgataaatgcatttgaggagatggttaatgaatggctcaagcagggg
aggattgaagttcttgctcaggtccagggtatggagtacagtaatcgcacagctagtgcc
agcttcgtagccaaactttctcgggagcaagaaaggagacaactgtatcccaaagaagat
gacctcgtactgctacatctgccagagaacactggagcgtatgcacacgatgaacctgct
gaacaccatgtactgcctcattttggttatgtgtctcggtccagcgtttctaacaggggt
ccaggcccaactgtaaacatgactattcagactcgtggaaatgtatcttcggtgaacact
cagtctgtgcggtgcgaagtcattgggtcgttgatcagcacatttcgggagttccgggca
ctgtgtttattgcgtaatggaccaatgttgcgtcctcttcttgctccacacgtgtcgtat
ttcaaacacagtcaagatatccagctgaagatggatgcaccagagtacaacatagatcag
tccagagcgatagactgtggtcttgccatgataaagaggacacaaaagaccccaaaattt
ctactgattcatggtcctccaggaacagggaagagtaaaaccattggcggtctgctctac
aaacttctgtcttcggatattaacagcgccgccctgggggggaattttccctccaagact
cggaggacgcgtgttcttctctgtgctccctctaatgctgccatcgacagtctgatgaag
aaagtcattgtggtctttaaagagaaatgtcgtaacatcaacgctccacaaggtaattgt
ggtgacataaatttggtgaggttgggcagcgagaagaccatttccaagatactgaaacca
ttcagcctcgaccatcagatcagagctagagcacagcgaacgcagcagactgtagaagct
gacatacagaagcaaaaggagctgctggaccaggatattgaggttgtctcgaagctctgt
gcaaaggcccaaaaagggtcttctgagttcaagagatttactgagaggaaaatggagctt
ttaagagagattgaaggattgagtcgaaagattaaagagtgtcgtgggaagcgtcaggaa
tctcaggctcttgtgctgcagaatgctcacgtcatctgctgtacgctcagcaccagtgga
agcaccgtgctggaaaatgctttccgacgactcggacacgagcccttcagctgcgttatc
attgatgaggctagtcaggctaaagaaaccgagacgttgattcccatgctgtatcgatgt
ccggctgtaatccttgttggtgatcccaaccagcttcctccaactgtggtctcccagaaa
gccaaggagttgggctacgaccagtccctaatggttcggttatgcaaaagcctccagtcg
aatgcacagccctctcccgtcttcctcctcagcatgcagtatcgcatgcatcccgacatc
tgcgaatttccatccaaatacatctacaacaacacgctcaagaacgactggcagggccag
tgcaggcagtatgaggaggaggaaaggacattgaccgtgtcagagttacgcctcatcagg
ttattgagaggacgatgcgagtgtgagaccgctctaaagcgttgttccttcagctggccc
ttcaaatcttaccgagtgttcgacgtgactgatggcagagagaacaaggagggcgattca
tttagtaacaataaagaggtgaaactggtcctgatgttgttaaagctgctgagtgagaag
caatctgtgcgtgtgggggtcatcacaccatataacgcccagaaacgaagaataatggat
gccatgaggaagccggacttcgaatgcaagcacctccaggtggaagtggatactgtggat
ggttttcagggtcgtgaaatggactgcattattgtgtcttgtgtaagagccagtagtgaa
acaggttccattggttttcttggtaatcggcaaaggttgaacgtaacgattaccagagcc
aagttcagcctcttcatactcggacatctacgcacactcagggaacaaagcgattgggga
gcattgattgatgatgctagaaaacgtgggaatataatcaaaacgcaggatcgagattac
caaagcgacgtcaggaagatccttaaaaatgattcgctatctcgcagtctctctcatcct
cctgttggaagaccgagcaccgtgacctcacccatccctcatgttccaatggaaacgggg
cgtgcttctacttcacgacctcacccgagcgccagtcttttacgtcagaactcgatgccg
aggccgatacctctggactgccctagagacccccaaataactgaaaggcccacagatccc
cgctttgcagagcggcggccaatcggagaacagaggcaggacgttgatgggaggggctta
tccatgtcacaccaaaggcccacagatccccgctttacagagcggcggccatttagagat
gactatcgaaatgccgcccattcttcccgacacacttccaaacattttccgtcaccgaaa
agacacaggagataa
DBGET
integrated database retrieval system
