KEGG   Paramisgurnus dabryanus (large-scale loach): 135727865
Entry
135727865         CDS       T10799                                 
Symbol
polr2eb
Name
(RefSeq) DNA-directed RNA polymerases I, II, and III subunit RPABC1
  KO
K03013  DNA-directed RNA polymerases I, II, and III subunit RPABC1
Organism
pdab  Paramisgurnus dabryanus (large-scale loach)
Pathway
pdab03020  RNA polymerase
pdab03420  Nucleotide excision repair
pdab04623  Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:pdab00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    135727865 (polr2eb)
  09124 Replication and repair
   03420 Nucleotide excision repair
    135727865 (polr2eb)
 09150 Organismal Systems
  09151 Immune system
   04623 Cytosolic DNA-sensing pathway
    135727865 (polr2eb)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pdab03021]
    135727865 (polr2eb)
   03400 DNA repair and recombination proteins [BR:pdab03400]
    135727865 (polr2eb)
Transcription machinery [BR:pdab03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     135727865 (polr2eb)
  RNA polymerase III system
   RNA polymerase III
     135727865 (polr2eb)
  RNA polymerase I system
   RNA polymerase I
     135727865 (polr2eb)
DNA repair and recombination proteins [BR:pdab03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      135727865 (polr2eb)
SSDB
Motif
Pfam: RNA_pol_Rpb5_C RNA_pol_Rpb5_N NYD-SP12_N DUF7890
Other DBs
NCBI-GeneID: 135727865
NCBI-ProteinID: XP_065102009
LinkDB
Position
24:12217977..12220020
AA seq 210 aa
MDDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTV
LVAHNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRAIIVVQMGMTPSAKQSLVD
MAPKYILEQFLQQELLINITEHELVPEHIVMTKEEVTELLARYKLKESQLPRIQAGDPVA
RYFGLKRGQVVKIIRPSETAGRYITYRLVQ
NT seq 633 nt   +upstreamnt  +downstreamnt
atggatgacgaagaggagacttaccgattatggaaaattagaaaaactataatgcagctc
tgtcacgatcgcggttatttagtaacgcaagatgaattggaccagaccctcgatgagttt
aaaagtcagtttggagacaaacccagtgagggtcgaccgcgacgaaccgacctcactgtc
ctggtcgcccacaacgacgatccaaccgaccagatgtttgttttctttcctgaggaaccc
aaagttggcatcaaaaccataaagatgtactgccaacgtatgcaagaggagaacatcaca
cgagccattattgtagtacagatgggtatgaccccttcagccaagcagtctctggtagac
atggcaccgaagtacatactcgaacagtttcttcaacaagagcttctgatcaacattact
gaacacgagcttgtgcccgaacatatagtgatgactaaagaggaagtgaccgagctgttg
gcgagatataaactaaaggaaagccagcttcccaggattcaagctggagaccccgtggct
cgatactttggcttgaaaagaggccaggttgttaagattatcagaccaagtgagactgct
ggacggtacatcacgtacagattggtccagtaa

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