KEGG   Paramisgurnus dabryanus (large-scale loach): 135729286
Entry
135729286         CDS       T10799                                 
Symbol
col2a1a
Name
(RefSeq) collagen, type II, alpha 1a isoform X1
  KO
K19719  collagen type II alpha
Organism
pdab  Paramisgurnus dabryanus (large-scale loach)
Pathway
pdab04510  Focal adhesion
pdab04512  ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:pdab00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    135729286 (col2a1a)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    135729286 (col2a1a)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:pdab00536]
    135729286 (col2a1a)
Glycosaminoglycan binding proteins [BR:pdab00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   135729286 (col2a1a)
SSDB
Motif
Pfam: Collagen COLFI VWC Frataxin_Cyay VWC2L_2nd
Other DBs
NCBI-GeneID: 135729286
NCBI-ProteinID: XP_065102896
LinkDB
Position
11:12450177..12470003
AA seq 1493 aa
MFRLADSRTLLLLVATHCVLVTLVRCQQEDDQEELGGCIQDGQQYADRAVWKPEACRVCV
CDSGSVLCDEVICEDLTDCANPVISPGECCPICPAETDEPIGSIGGKGQKGEPGDIADVV
GPRGPAGPMGPPGEQGQRGEKGPKGDKGNVGPRGRDGEPGTPGNPGPPGPPGPPGPNGPV
GLGGNFAAQMSGGFDEKSGGANLGVMQGPMGPMGPRGPPGPSGAPGPQGFPGNPGETGEP
GPAGALGPRGPAGPPGKPGSDGESGKPGKSGERGPTGPQGARGFPGTPGLPGIKGHRGHP
GLDGAKGESGAAGAKGETGSAGENGSPGPMGPRGLPGERGRSGAPGSAGARGNDGLPGPA
GPPGPVGTAGAPGFPGSPGSKGEAGPTGARGPEGAQGQRGEAGAPGSPGPAGASGNPGTD
GIPGAKGSAGAAGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGIPGFKGESGPKGER
GVAGPQGAPGPSGEEGKRGPRGEPGSAGPLGPPGERGAPGNRGFPGQDGLAGAKGAPGDR
GVPGVTGPKGSTGDPGRTGEPGLPGARGLTGRPGDAGAQGKVGPTGAPGEDGRPGPPGPL
GARGQPGVMGFPGPKGSNGEPGKPGEKGLIGRTGLRGLPGKDGETGPTGPPGPAGVAGER
GEQGQPGPSGFQGLPGPTGAPGEPGKPGDQGLPGEGGAVGAVGPRGERGFPGERGGAGPQ
GLQGPRGLPGTPGTDGPKGAIGPAGASGAQGPPGLQGMPGERGTVGIPGAKGDRGDSGEK
GPEGAPGKDGTRGLTGPIGPPGPSGPNGAKGETGGIGPIGSPGSRGAPGDRGEVGPPGPA
GFAGPPGADGQPGLKGEHGESGQKGDAGSPGPQGPSGAPGPVGPTGITGPKGARGAQGAP
GATGFPGAAGRVGPPGPNGNPGGVGPAGPAGKDGPKGVRGDAGPPGRPGDAGLRGPPGLS
GEKGAPGEDGRLGPDGPPGPSGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGASGSS
GDRGPPGPVGPPGITGPAGEPGREGNTGADGPPGRDGAAGAKGERGNTGPVGAPGAPGAP
GAPGSVGPIGKQGDRGENGPQGPAGAPGPAGARGMVGPQGPRGDKGEAGEVGERGLKGHR
GFTGLQGLPGPPGSSGDQGPAGPAGPSGAKGPAGPAGPSGKDGANGQPGPIGPPGPRGRS
GESGPAGPPGNPGPPGLPGPPGPGIDMSAFAGLGHTEKGPDPLRYMRADEASSSLRNHDV
EVDATLKSINNQMEGIRSPDGSRKNPARSCRDLKLCYPELKSGDYWVDPNLGSTADAIKV
YCNLETGETCVKPSTPKIPRKNWWSSKSKTNKHVWFGESMNGGFHFSYAENGQTTTAIIQ
MNFLRLLSTEATQTITYHCKNSIAYMDQATGNLKKALLLQGSNDVEIRAEGNSRFTYGVL
EDGCKKHTGQWAKTVIEYKTQKTSRLPIVDIAPMDIGGENQEFGVDIGAVCFL
NT seq 4482 nt   +upstreamnt  +downstreamnt
atgttcagattagcggattcacggactctcctgctacttgtagcaacgcattgcgttttg
gtaacccttgtgagatgtcaacaagaagatgaccaagaagagttaggcggttgcatccaa
gatgggcagcagtatgcagaccgtgctgtatggaagccagaagcgtgccgcgtctgtgtg
tgtgactcaggctcggtactgtgtgacgaagttatctgtgaagacttgaccgactgtgcc
aatcccgtcatttcacccggagagtgctgtcccatctgcccagctgaaaccgacgagcct
atcgggtcgattggtggaaagggacagaaaggagaaccaggcgatattgcagatgttgta
ggaccaagaggacctgctggcccaatgggacctccaggagaacagggacaacgtggtgag
aaaggacctaagggagataagggaaatgtcggacctagaggaagagatggcgaacctggt
acacctggtaacccaggaccccctggaccacccgggccaccaggacctaatggtccagtt
ggacttggaggaaactttgctgctcagatgtctggtggatttgatgagaagtccgggggt
gctaatttgggtgtgatgcagggaccaatgggtccaatgggcccccgtggacctcctggc
ccctctggagcacctggcccacaaggtttccctggcaaccctggagagactggcgaaccc
ggccctgctggtgcccttggaccccgtggaccagctggaccacctggaaaacctggaagc
gatggtgaatctggtaagcctggtaaatctggtgagcgtggacctacaggacctcaggga
gctcgtggattccctggaactcccggccttcctggcatcaagggacacagaggacaccca
ggtcttgatggagctaaaggagagagtggagctgcaggtgctaagggtgaaacaggttct
gccggtgagaatggttctcctggaccaatgggtccacgtggtctgcccggtgagaggggt
cgttctggagcccctggttctgctggtgcccgtggtaatgatggtctgcctggtcctgct
ggtcctcctggccctgttggtacagctggtgctccaggtttcccaggatcccctggttcc
aagggagaagctggtcccactggagctcgcggacccgagggtgcacaaggacaacgtgga
gaggctggtgcacctggatcacctggacccgctggtgcttctggtaaccccggtactgat
ggtattccaggagccaaagggtctgctggagccgctggtattgcaggtgcaccaggtttc
ccaggaccacgtggcccaccaggacctcaaggagccaccggacctcttgggcctaaaggc
caatctggagatcctggcatcccaggatttaaaggcgagtctggacccaagggagagcgt
ggtgttgctggacctcaaggtgctcctgggccctcaggagaggaaggcaagagaggtccc
agaggagaacctggatctgctggacctcttggacctcctggagaaagaggagctccaggt
aaccgtggattccctggtcaggatggtctagctggagcaaagggtgcacctggtgaccgt
ggtgttcctggtgtgaccggaccaaaaggttcaaccggagatcctggccgcacaggcgag
cctggtcttcctggagctagaggtctcactggacgtcctggtgatgctggagcccaagga
aaagttggaccaactggagcccctggtgaagatggacgacctggtcctcctggacctctg
ggagctcgcggtcagcccggtgtgatgggtttccctggtcccaaaggatctaatggtgaa
cctggaaaacctggagaaaaaggtcttattggacgcactggtcttagaggtttgcctggt
aaagatggagagactggacctactggtccacctggtcctgctggtgttgctggtgagaga
ggagagcagggtcagcctggtccttctggcttccagggtctgccaggtcccacaggggca
cccggagagcccggtaaaccaggtgaccagggtcttcctggagagggtggagctgtaggc
gctgttggaccaagaggtgaacgtggtttccctggtgagagaggaggtgctggccctcaa
ggtcttcagggacccaggggacttccaggaacacccggaactgatggacctaagggtgca
attggaccagctggagcttccggtgctcagggtcctcctggtctccagggaatgcctggt
gagagaggaacagttggtatccctggagctaaaggtgacagaggtgacagtggagagaaa
ggacctgaaggtgctcccggcaaagatggcacaagaggcttgactggtcctattggtcca
cctggtccttctggtcccaatggtgcaaagggtgaaactggtggtattggcccaattggt
tctcctggttctcgtggcgctcctggtgaccgtggtgaggttggtccacctggacctgct
ggatttgccggacctcctggtgctgatggccagcctggactgaagggagagcatggtgag
tcaggacagaaaggtgatgctggatctcccggacctcagggaccatcaggagcacctggt
ccagtaggcccaactggtattacaggacctaaaggagcacgtggagcccaaggagcccct
ggtgccactggtttcccaggagctgcaggaagagttggaccacctggccccaatggtaac
cctggtggtgttggtccagcaggtcctgctggtaaggatggtcctaagggagttcgcggt
gatgctggtccacctggaagacctggagatgctggactgcgtggacctcctggtctgtct
ggagagaagggagcgcctggagaggatggtcgtcttggtcctgatggtcctcctggtcct
tctggtcttgctggtcagcgtggtattgttggtctacctggtcagcgtggtgaaagaggt
ttcccaggacttccaggaccctctggtgagcctggcaaacagggagcttctggttccagt
ggtgaccgtggacctcctggtcctgtcggaccccctggaattactggacctgctggagaa
cctggacgtgagggtaatactggagctgatggtccacctggtagagatggggctgccggt
gcgaagggtgagcgtggtaacactggcccagtaggtgctcctggagctcctggcgcccct
ggtgctcctggttccgttggcccaatcggaaagcagggagacagaggagagaatggacct
caaggacccgctggagccccaggacctgctggagctagaggcatggttggaccccaagga
cctcgtggtgataagggtgaggcaggagaagttggagaaagaggattgaaaggacacaga
ggattcactggtctgcagggtcttcctggacctcctggttcttctggagaccaggggcct
gctggacctgctggaccaagtggcgctaagggacctgctggacctgctggaccatctggt
aaggatggtgctaatggtcagccgggacctattggaccacctggacctcgtggacgttct
ggagaatctggccctgctggtccccctggtaaccccggaccccctggtcttcccggaccc
ccaggccctggcattgacatgtctgcctttgctggcttgggccataccgaaaagggacct
gatcccctgcgatacatgcgtgctgacgaggcttccagctctcttagaaaccatgatgta
gaagtggatgccaccctgaagtctatcaacaaccagatggagggcatccgcagccctgat
ggctcccgcaagaaccctgcacgtagctgccgagacctgaagctttgctaccctgaattg
aagagcggtgattactgggtagatcccaatcttggtagcactgctgatgccatcaaagtt
tactgcaacttggagaccggtgagacctgcgtgaagcccagcactcccaaaatcccacgc
aagaactggtggagcagcaagagcaagacgaataagcacgtttggttcggcgagagcatg
aacggcggattccacttcagttatgctgaaaatggccagactaccaccgccatcatccag
atgaacttcctgaggctgctgtctaccgaggccactcagaccatcacctaccactgcaag
aacagcattgcttacatggaccaagccacaggcaaccttaagaaggctcttctgctgcag
ggatccaacgatgtggagatcagagcagagggcaacagccgctttacctatggcgtgctg
gaggatggctgcaagaagcacacaggtcagtgggccaagactgtgatcgagtacaaaact
cagaagacatccaggctgcccatcgtggacattgctcctatggacatcggaggagagaat
caggagtttggagtggacattggtgcagtctgcttcttgtaa

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