Paramisgurnus dabryanus (large-scale loach): 135729522
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Entry
135729522 CDS
T10799
Symbol
smarcb1a
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A isoform X1
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
pdab Paramisgurnus dabryanus (large-scale loach)
Pathway
pdab03082
ATP-dependent chromatin remodeling
pdab03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
pdab00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
135729522 (smarcb1a)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
135729522 (smarcb1a)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pdab01009
]
135729522 (smarcb1a)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pdab03021
]
135729522 (smarcb1a)
03036 Chromosome and associated proteins [BR:
pdab03036
]
135729522 (smarcb1a)
Protein phosphatases and associated proteins [BR:
pdab01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
135729522 (smarcb1a)
Transcription machinery [BR:
pdab03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
135729522 (smarcb1a)
SWI/SNF complex
135729522 (smarcb1a)
Chromosome and associated proteins [BR:
pdab03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
135729522 (smarcb1a)
PBAF complex
135729522 (smarcb1a)
SWI/SNF complex
135729522 (smarcb1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
DUF1679
Motif
Other DBs
NCBI-GeneID:
135729522
NCBI-ProteinID:
XP_065103305
LinkDB
All DBs
Position
11:complement(18329860..18336228)
Genome browser
AA seq
378 aa
AA seq
DB search
MLTFNMALSKTYGQKPIKFQLEEDGDFYMIGSEVGNYLRMFRGSLYKRYPSLSRRLATVE
ERKKIVASSHDHGYTTLATSVTLLKASEVEEILEGHDEKYKAVSISTEPPAYLREQKAKR
NSQWVPTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENATQAEILV
PIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLSPLTFVPAIASAIRQQIES
YPTDSILDEQMDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGLGGEF
VTTIAYSIRGQLSWHQRTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAEMEKKIRD
QDRNTRRMRRLANTAPAW
NT seq
1137 nt
NT seq
+upstream
nt +downstream
nt
atgctaacgttcaacatggcgttaagcaaaacatacgggcagaaacctattaaatttcaa
ctggaggaggatggagacttttacatgattggatcagaggtgggaaattacttgcgtatg
ttcagggggtctttatataaaagatacccttcactttcaagaagactagcgacagtagag
gaaagaaagaaaattgtagcatcatctcacgatcacggttacaccactttagccaccagt
gtgacgttgttgaaggcttcagaagtagaggagatattagagggacatgacgagaagtat
aaagcggtgtccatcagcactgagcctccagcctatctcagggagcagaaagccaagaga
aacagccagtgggtgcccacccttcccaacagttcccaccacttagatgctgttccttgc
tccaccacgatcaaccgcaaccgaatgggacgtgacaaaaaaaggaccttccctctatgc
tttgatgatcacgatcctgctgttatccatgagaatgctacacaagctgagatcctggtg
cccatccgccttgacatggagattgatgggcagaagctgcgtgatgctttcacatggaac
atgaatgagaagctaatgactccagagatgtttgctgaaatcttatgtgatgatctggat
cttagcccccttacatttgttcctgccattgcctcagccatcagacagcagatagagtcc
taccccacagacagcatactggatgagcaaatggaccagagagtcatcatcaagttaaac
atacacgttgggaacatatctctggtggaccagtttgaatgggacatgtctgagaaggag
aactcacctgagaagtttgccctaaagctgtgctctgagcttggccttgggggagagttc
gtcaccactattgcgtatagcattcgtggccaacttagctggcatcaaaggacctatgcc
ttcagtgagaaccctcttcccacagtggagattgccatcagaaacacaggtgatgctgac
cagtggtgcccattacttgagacactgacggatgctgagatggagaagaagatcagggac
caggacagaaacacaaggcgaatgaggcgacttgcaaacacagccccagcatggtga
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