Paramisgurnus dabryanus (large-scale loach): 135729524
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Entry
135729524 CDS
T10799
Symbol
snrnp200
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
pdab Paramisgurnus dabryanus (large-scale loach)
Pathway
pdab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pdab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135729524 (snrnp200)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pdab03041
]
135729524 (snrnp200)
Enzymes [BR:
pdab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
135729524 (snrnp200)
Spliceosome [BR:
pdab03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
135729524 (snrnp200)
Complex C
U5 SnRNP specific factors
135729524 (snrnp200)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
SNRNP200_wHTH
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
PhoH
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
135729524
NCBI-ProteinID:
XP_065103308
LinkDB
All DBs
Position
11:complement(18381536..18397596)
Genome browser
AA seq
2134 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTKMGDRSQRTK
PQMLEERRAKRRKRDEDRHDINKMKGFTLLSEGIDEMVGIVYKPKTKETRETYEILLSFI
QAALGDQPRDILCGAADEVLAVLKNDKMRDKERRREVEQLLGPADDTRYHVLVNLGKKIS
DYGGDKELQNMDDNIDETYGVNVQFESDEEEGDEDQFGEVRDEGSDDSEGEEADETSTLT
ANLGNTGDVMMTKKKDLHPRDIDAFWLQRQLSRFYNDAIVSQKKADEVLEILKTAGDDRE
CENQLVLLLGFNTFDFIKVLRQHRRMILYCTMLASAQSEAEKEKIMNKMESDQDLSKVLY
QLQETEKEDIIREERSRRERVRKSRVDDLESMDIDRGEAVTSKQLLDLEDLAFSQGSHFM
ANKRCQLPDGSFRKQRKGYEEVHVPALKPKPFSDDETLVAIEKLPKYAQAGFEGFKTLNR
IQSKLFKTTMETDENLLVCAPTGAGKTNVALMAMLREIGKHINMDGTINVDDFKIIYIAP
MRSLVQEMVGSFGKRLASYGIIVSELTGDHQLCKEEINATQIIVCTPEKWDIITRKGGDR
TYTQLVRLIIIDEIHLLHDDRGPVLESLIARTIRNVELTQEDVRLIGLSATLPNYEDVAT
CLRVDPSKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLV
FVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFA
IHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTE
LGALDILQMLGRAGRPQYDSKGEGILITSHGELQYYLSLLNQQLPIESQMVAKLPDMLNA
EIVLGNVQTVKDAVNWLGYTYLYVRMLRNPTLYGVSHDDRSSDPLLERRRMDLIHTASTV
LEKNNLIKYDKRSGSFQVTDLGRIASHFYITHESIMTYNQLLKPTLSEIELFRVFSLSSE
FRNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAYISQLKLEGFALMADMVY
VTQSAGRLMRAIFEIVLSRGWAQLTDKTMNLCKMIDKRMWQSMSPLRQFRKLPEEVIKKI
EKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHQFPKLDLAVHLQPITRSTLKVELT
ITPDFQWDDKIHGSSEAFWILVEDVDSEVVLHHEYFLLKAKYAQDEHLVTFFVPVFEPLP
PQYFIRIASDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNAAFESLYQN
FPFFNPIQTQVFNAVYNSDDNVFVGAPTGSGKTICAEFAILRMLLHNAEGRCVYITPMEA
LAEQVFVDWHQKFQDTLNKKVVLLTGETSTDLKLLGKGDIIISTPDKWDILSRRWKQRKN
VQNVSLFIVDEVHLIGGDNGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWL
GCSTTATFNFHPNVRPVPLELHIQGFNVSHTQTRLLSMAKPVYHAIMKHSPSKPVLVFVP
SRRQTRLTAIDILTFCAADVVPQRFLHSTEKDLAPFMEKLSDNTLKETLSNGVGYLHEGL
SSSERRIVEHLYMSGAIQVMVVSRSLCWGTNISAHLVIVMDTQYYNGKIHAYVDYPIYDV
LQMVGKANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCLHDHFNAEIVTKT
VENKQDAVDYLTWTFLYRRMTQNPNYYNLQGMSHRHLSDHLSELVENTLQDLEQSKCISI
EDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKIRGLIEIISNAAEYKNIPIRHHE
DTLLRQLAQKVPHKLNNPKFNDPHVKTNLMLQSHLSRMQLSAELQSDTEDILSKAVRLIQ
ACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFSSEHIKRCTDKGVESIFD
IMEMEDDERTALLQLSEVQMADVARFCNRYPNIELSYEVAEKDDIKSGSPVVIQVQLERE
EEVTGPVIAPLFPQKREEGWWVVVGDPKSNSLISIKRLTLQQKAKVKLDFVAPVVGVHNY
TLYFMSDAYMGCDQEYKFSVDVKEADSDGDSDSD
NT seq
6405 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgttactgctcgtagcctgcagtatgaatacaaagcgaactctaacttggtg
ttgcaagcggacagatctctgatcgaccgcacccgcagagatgagcccaccggagaggtc
ctgtctctggtcggcaagttggagggaacaaagatgggagacagaagccagagaaccaag
cctcagatgttggaggagaggagagcgaagaggcgaaagagagatgaggacagacacgac
atcaacaaaatgaaaggcttcacattgctgtctgaagggattgatgagatggtgggaatt
gtgtacaagcccaagaccaaagagacaagagaaacatatgaaatcctcctcagctttatt
caggctgcacttggagatcagccaagagatatcctatgtggagctgcagatgaagtgttg
gctgtgctgaagaatgacaagatgagagacaaagagagaagaagggaagtagagcaactg
ctgggtcctgctgatgacacgcgataccatgtactggtcaacctgggcaagaaaatctca
gactatggtggagacaaggagctccagaatatggatgacaacatcgatgaaacatatgga
gtcaatgtacagtttgagtctgatgaggaggagggcgatgaggaccagtttggtgaggtt
cgagatgaaggctctgatgacagtgagggagaggaggcagatgagaccagtactctgact
gctaatctgggcaacacgggcgatgtaatgatgaccaaaaagaaagatcttcatccacga
gacattgacgccttctggcttcagcgacaactaagccggttttataatgatgccatagtg
tctcagaagaaagcagatgaagtcttggagatcctcaagactgccggtgatgacagagag
tgtgagaaccagttggtgctgcttttgggcttcaacacttttgatttcatcaaggtcctc
cgacagcatagacgaatgatcctttactgcaccatgttggccagtgcccaaagtgaagct
gaaaaagaaaagatcatgaataaaatggagtctgatcaggatctttccaaagtgctttac
cagctgcaggagactgagaaggaggacatcatcagggaggaacgatctcgacgggaaaga
gtacgaaaatcccgcgtagatgatctggagtcgatggacattgatcgtggggaggctgtg
acctctaagcaactactagaccttgaagatctggccttctcccagggcagccatttcatg
gccaacaagcgttgccagctgcccgatggctcctttcgcaaacaaagaaaaggctatgag
gaggtgcacgtgcctgctctcaagccgaagccctttagtgatgatgagacattggtagca
attgagaaacttcccaaatacgcccaagctggatttgagggattcaaaacattgaatcgt
atacaaagtaaactcttcaaaaccactatggagacggatgagaatctgctggtttgcgct
ccaacgggtgctggcaaaaccaatgttgctctgatggcaatgcttcgagagatcggcaag
catatcaacatggatggcaccatcaatgttgatgattttaagattatctacatcgctccc
atgcgctccctggtgcaggagatggtgggcagctttggaaagcgcttggccagttacggc
atcattgtgtctgagttgactggagaccaccagctctgcaaagaggaaattaatgccacc
cagattattgtgtgcaccccagaaaaatgggacatcattaccagaaagggaggggaccgc
acttacacacaacttgtgcggctcatcattatcgatgagatccacttgctgcacgatgac
cgcggcccggtgttagagtccctgattgctcgaaccatccgaaatgtggaactgacacag
gaggatgtgaggcttattggcctcagtgccacactgcccaactacgaggacgtggccacc
tgcctgcgcgtagatccatctaagggacttttctattttgacaacagttttcggcctgta
ccactggaacaaacctatgtaggaatcacagagaaaaaggccattaagcgtttccagatt
atgaatgagatcgtttatgaaaagatcatggaacatgctggaaagaatcaggtcctggtg
ttcgtgcattccagaaaggaaaccgggaagactgcgcgtgcaataagggacatgtgtttg
gaaaaggacactcttgggttgttcctcagagagggttcggcctccactgaggtcttgaga
actgaagcagagcagtgcaagaatctggagctgaaggatctcttgccttacggttttgct
atccaccatgccggaatgaccagggtggacagaacactggtagaggatctgtttgctgac
cgtcacattcaggtgttggtgtccacggccactctggcttggggtgtgaatttgccagcc
cacactgtcataatcaaaggcacacaggtctacagcccagagaaaggcagatggaccgaa
ctgggagctctggacattcttcagatgctgggtcgtgccggcaggccgcagtatgactct
aaaggagagggtattctcatcacatctcacggagagctgcagtactacctgtcgctgctc
aatcaacagctgcccatcgaaagccaaatggtggccaaactgcctgacatgctcaatgct
gagattgtgttgggcaatgtgcagacggttaaggatgcagtgaactggctgggttacact
tacctctatgtccgaatgctgcggaacccaaccctttatggcgtttctcacgatgaccgc
agctctgatccactgctcgaacgtcgcaggatggaccttatacacacagcctccactgtc
ctggagaagaacaacttgatcaaatacgacaaacgatccggcagctttcaggtgacagac
ctgggccgcattgccagccatttctacatcacccacgagtccattatgacctacaaccag
ctgctgaagcccactctgagtgagatcgagctcttcagggtgttttctctctcttcagag
ttcagaaacatcacagttagagaggaggaaaaacttgagcttcagaaactgcttgagagg
gtccccattccagtaaaggaaagcattgaggagcccagcgcaaagattaatgtgctgctg
caggcatatatctctcagctcaagcttgagggctttgctcttatggctgacatggtgtat
gtaacacagagtgctggcaggctgatgagggcgatctttgagattgttttgagcagaggc
tgggcacaacttactgataaaactatgaatctctgcaagatgattgacaaaaggatgtgg
cagtccatgtctcctttgcgtcagttccgcaaacttccagaggaagtcatcaaaaagatc
gagaagaagaacttcccatttgagcgcctttatgatctaaaccacaatgaaattggtgag
ttgattcgcatgccaaagatggggaagaccatccataagtatgtccatcagttcccaaag
ctggacctggcagttcacctgcagcccatcacacgctccacactaaaagtggaactcacc
atcacgccagatttccagtgggatgacaagatacatggctcatccgaagccttctggatc
ttggtcgaggatgtggacagtgaggtggtccttcatcacgaatacttcctcctgaaagcc
aagtatgctcaggatgagcatctggtcactttcttcgttcctgtgtttgagccgctgccc
ccgcagtattttattcgcatagcttcagaccgctggctgtcttgcgagacccagcttcca
gtctcgtttcgtcacctgatcctgcccgaaaaatatccaccccctactgaactgctggat
ctgcagcctttgcccgtgtctgctttgagaaatgcagcctttgagagcctttaccaaaat
ttcccctttttcaaccctatccaaacccaagttttcaatgccgtgtacaatagtgatgac
aacgtcttcgttggtgcccccactggcagtgggaagaccatatgtgcagagtttgccatt
cttaggatgctcctacacaatgcagagggtcgatgtgtgtacatcacaccgatggaggct
cttgctgaacaggtttttgtagactggcaccagaagtttcaggacactttgaataagaag
gttgtcttgcttactggtgagaccagcactgacctaaagctgctggggaaaggtgacatt
atcatcagcaccccagacaagtgggacatcctgtctcgccgatggaagcagaggaagaac
gtgcagaacgttagcctcttcattgtggatgaagttcatctcattggaggagataacgga
cctgtgttggaggtgatttgctccagaatgaggtacatttcctctcaaattgagcgtccc
atccgtattgtggccctcagctcttctctgtccaacgctaaagatgtggcccactggctc
ggctgcagcaccacagcgactttcaacttccaccccaacgtcagaccggttcctctggag
cttcacatccagggcttcaacgtcagtcacacacagactcgtctgctgtccatggctaaa
ccagtgtatcatgccatcatgaaacactccccatccaaaccagtgctggtgtttgtgcca
tcaagacgccagactcgtctcaccgctatcgatatccttactttctgcgctgcggatgtg
gttccacagaggtttctgcactccaccgagaaggatctggctccgttcatggagaaactc
tctgataataccctgaaggagaccctgtccaatggggtagggtacttgcatgagggcctt
tcatcatcagagcggagaattgtggaacatctttatatgtctggtgccattcaggtgatg
gtagtatctcgctctttatgttggggaactaatatttccgcccaccttgtgattgttatg
gacacacagtactacaatggaaaaatccatgcgtatgttgactacccaatctacgacgtt
ctgcagatggtagggaaggccaatcgtcctctgcaggatgatgagggtcgatgtgttatc
atgtgccaggggtctaaaaaggacttctttaagaaattcctttacgagcctctgcctgtg
gagtctcacttggatcactgcctccacgaccatttcaatgccgagatcgtcaccaagact
gtggagaacaaacaggacgccgtggactacctgacatggacgttcctgtaccgccgaatg
acccagaaccccaattattacaaccttcagggtatgtctcaccgtcacctctctgatcat
ctgtctgagctggtggaaaacaccttgcaagatctggaacagtccaagtgcatcagcatt
gaggacgagatggatgttgctcctctgaatttgggcatgatcgcagcctactattacatt
aactacaccactattgagctcttcagtatgtccctgaatgccaagacaaagatccgaggt
ctcattgagatcatctccaacgctgcagaatataaaaacattcccatcaggcaccacgaa
gacaccctactccgacagctggctcagaaggtccctcataaactgaacaaccccaagttt
aacgaccctcacgtgaagaccaacctgatgcttcagtctcatctttcccgtatgcaactg
agtgcagagctccagtcagacactgaagacatcctcagcaaggctgttcggctgatccag
gcgtgtgtggatgtactttcaagtaacggctggttgagtcctgccctggctgctatggag
ctggctcagatggtcacacaagccatgtggtccaaagactcttatcttaagcagctaccc
cacttttcttcagaacacatcaagcgctgtacagataagggtgtggagagcatctttgac
atcatggagatggaagacgatgagcgcaccgctctgctacaactttcagaagtacaaatg
gctgacgtggcacggttctgcaaccgctatcccaacattgagctctcgtatgaagtggct
gagaaagatgatatcaaaagtggaagtcctgtggtcattcaagtgcagttggagagagag
gaggaagttacaggacctgtcatagctcctctgttcccccagaaacgtgaagaaggctgg
tgggttgttgtaggagaccccaaatccaacagtctcatctcaatcaagagactcacactt
caacagaaggctaaggtgaagcttgattttgtggcgcctgttgtgggtgtgcacaactac
acgctgtatttcatgagcgacgcctacatgggctgtgaccaagaatacaagttcagtgtg
gacgtgaaggaggcagacagcgacggagacagtgacagcgattag
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integrated database retrieval system
