Paramisgurnus dabryanus (large-scale loach): 135729610
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Entry
135729610 CDS
T10799
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
pdab Paramisgurnus dabryanus (large-scale loach)
Pathway
pdab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pdab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135729610 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdab03019
]
135729610 (xab2)
03041 Spliceosome [BR:
pdab03041
]
135729610 (xab2)
Messenger RNA biogenesis [BR:
pdab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
135729610 (xab2)
Spliceosome [BR:
pdab03041
]
Complex B
Other components
Prp19-related factors
135729610 (xab2)
Complex C
135729610 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_19
TPR_2
TPR_12
TPR_8
TPR_15
TPR_16
TPR_MalT
ARM_TT21_C
ARM_TT21
NRDE-2
TPR_1
LTN1_E3_ligase_6th
DUF4515
Motif
Other DBs
NCBI-GeneID:
135729610
NCBI-ProteinID:
XP_065103507
LinkDB
All DBs
Position
3:complement(39063501..39073175)
Genome browser
AA seq
848 aa
AA seq
DB search
MPTPGGKANVIFEDDDLPYEEEIIRNPYSVKCWIRYLEHKQNAPKSVLNMIYERALKELP
GSYKLWYNYLRERRKQVKGKCVTDPAYEEVNNCHERALVFMHKMPRIWIDYCQFMVSQSK
ITRSRRTFDRALRALPVTQHTRIWPLYLRFSRNLPLPETAIRVYRRYLKLSPENAEEYID
FLRSAGRLDEAALRLAAIVNDENFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMENTSESGQDEDEDIDLELRLARFEQLIIRRPLLLNSVLLRQNPHNVHEWHKRVK
LYDGQPRQIINTYTEAVQTVDPMKATGKPHSLWVSFARFYEENEQLDDARTIFEKATKVN
YKQVDDLAAVWCEYGEMELRHENYDQALRILRKATAIPARKAEYFDSSEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEDSFKAYERGI
ALFKWPNVHDIWNTYLTKFMDRYGGKKLERARDLFEQALDGCPPKYAKTIYLLYAKLEEE
YGLARHAMAVYERATSAVEPEERHQMFNIYIKQAAEIYGVTHTRAIYQKAIEVLPDEHAR
DMCLRFADMESKLGEIDRARAIYSYCSQICDPRMTALFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMLKATTNAGGTISDLAPGQSGVDDMRLLEQKAQQLAAEAEQ
DKPKPKDKILFVRSDTSRSELAELAKQANPDEIDIDDDDEDADDGEPDEVQLEQKSVPTA
VFGGLKDD
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atgccaacccctggcggaaaagcaaacgttatattcgaagatgatgatttgccatatgaa
gaagagatcatcaggaatccgtattcagtcaagtgctggatacggtaccttgaacacaag
cagaatgctcccaaatctgtgctcaatatgatctatgaaagagctttaaaagagctacct
ggcagttataagttatggtacaactacctaagagagagaaggaaacaggtgaaaggcaag
tgtgtcacagatccagcctatgaggaggtgaacaactgccatgagagagctctggtgttt
atgcacaagatgccgaggatttggatcgattattgtcagttcatggtgtctcagtcgaaa
attacacggagcagacggacgtttgatagggcattaagagcacttcccgttacccagcat
actcggatttggcccctgtaccttcgcttttcccgtaacttacctctgccagaaacagct
attcgtgtttacagacgttacctaaagttatctcccgagaatgcagaagaatacatcgat
ttcttgcgttcagccgggcgtctggatgaagccgcactacgcctggcagccattgtcaat
gatgaaaactttgtttctaaagaggggaagtcaaattatcagctctggcacgaactctgt
gacctcatctcacaaaacccagacaaggtgacatcactaaacgtgggagccattattcga
ggaggtctcactcgctttacagaccagcttggaaaactctggtgttccctggctgattat
tacatccgcagcggacactttgagaaagcgcgtgatgtatatgaggaagccatcctgacc
gtagtcaccgtgcgagacttcacccaggtgttcgacagctatgcgcagtttgaggagagc
atgatcgccgccaagatggagaacacatctgaatcgggacaggatgaagatgaagacatc
gacttagagttacgcttggcacgattcgagcagctgataattcgccgaccgctcttgctg
aacagcgtcttgctgcggcagaacccgcacaatgttcacgagtggcacaaaagagttaaa
ctttacgacggccaaccacgacagatcatcaacacgtacacagaggccgtgcagacggta
gacccaatgaaggccacaggaaaacctcactcactttgggtttcctttgccagattctat
gaggaaaatgagcaactggatgatgctcggactatctttgagaaggccaccaaggtgaat
tacaaacaggtggatgatcttgcagcagtgtggtgcgagtacggagagatggagctgaga
cacgagaactacgatcaggctctacgcatactaaggaaagcaacagctattccagcaagg
aaagcggagtatttcgattcatccgaaccggtgcagaatcgagtgtacaaatcacttaaa
gtatggtccatgcttgcagacttagaagaaagtcttggcacattccagtctacgaaggca
gtgtatgatcgcatcattgatctcaggattgccacacctcagatcatcatcaactatgcc
atgttcctcgaggaacacaactactttgaggacagctttaaagcgtatgagcgtggcatt
gccctctttaagtggcccaatgtccatgatatctggaacacgtacctcaccaaattcatg
gatcgctatggaggcaagaagctggagagagcgcgagatcttttcgagcaagcactggat
gggtgtcctcctaaatacgccaaaacgatatacctgctgtatgccaagctggaggaagag
tatggtctggcgcgacatgccatggctgtgtacgagagagccacttctgctgttgaacca
gaggaacgccatcaaatgttcaacatctacatcaaacaggcagcagagatttatggagtc
acacacacaagagccatctaccagaaagccattgaggtcctaccagatgagcacgccagg
gacatgtgtctgcgttttgctgatatggaaagcaaacttggagagattgaccgagcaaga
gccatctattcctactgctcgcaaatctgtgatccaaggatgaccgctcttttctggcaa
acctggaaggagtttgagattcgtcacgggaacgaggacacaatccgtgagatgctgcgg
attaaacgcagtgtgcaggccacctacaacacacaggtcaacttcatgtcatctcagatg
ctaaaggccaccaccaatgccggtggaacaatatcagatcttgctccagggcagagcgga
gtagatgacatgaggttgttggagcagaaggcccagcagctagctgcagaagcggagcag
gacaaacccaaacctaaagacaagatccttttcgtcaggagtgacacatctcgcagcgaa
ctcgccgaactggccaaacaagctaatccagatgagattgacattgacgatgatgatgag
gatgcagacgatggagaaccagatgaggtccagctagaacagaagtccgttcctaccgct
gtatttggaggactaaaggatgattga
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