Paramisgurnus dabryanus (large-scale loach): 135730884
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Entry
135730884 CDS
T10799
Symbol
sox6
Name
(RefSeq) transcription factor SOX-6 isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
pdab Paramisgurnus dabryanus (large-scale loach)
Brite
KEGG Orthology (KO) [BR:
pdab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pdab03000
]
135730884 (sox6)
Transcription factors [BR:
pdab03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
135730884 (sox6)
BRITE hierarchy
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GFIT
Motif
Pfam:
HMG_box
HMG_WDHD1
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
135730884
NCBI-ProteinID:
XP_073668531
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All DBs
Position
2:26309983..26514372
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AA seq
809 aa
AA seq
DB search
MPSSSEVMFEEHRRSQRDNIRIMSSKQATSPFTTTPDGGEDGVNQERMSWEKEENLEALA
PPLHSLIHNKPPPEELPPISSSVPPESDWDSLLSAQQRMESDSNKVCSLYSFRNNSTSPL
KPDEGGRERGDLLSSSAFGTPERRKGSLADVVDTLKQKKLEEMTKTEQDESSCMEKLLSK
DWKEKMDRLNTGELFGEIKGTPESLAEKERQLSTMITQLISLREQLLAAHDEQKKLAASQ
MEKQRQQMELARQQQEQIARQQQQLLQQQHKINLLQQQIQQVQGHMPPLMIPIFPHDQRT
LAAAAAAQQGFLFPPGMSYKPGDNYPVQFIPSTMAAAAASGLNPLQLQQLYAAQLASMQV
SPGAKMPPLPQPPNSGGPISPSGLKNEKRASTPLTQIKEEGTQPLNLSARPKTAEPVKSP
TSPTQSLFSGSKSSPNSLSKSGGIPSPLGGLGRGSSLDILSSLNSTALFGDQDAVMKAIQ
EARKMREQIQREQLQHHQQGMEAKLSALTGMSLNNCRADKERSHYESLGHHLGKLGEDGK
IGHRVIDLTRPEDFEGSKELNGSADKPHQYYCWPTGGASSAEARVYREPRGRNNNEPHIK
RPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMTNQEKQPYYEEQARLSKIHL
EKYPNYKYKPRPKRTCIIDGKKLRIGEYKQMMRSRRQEMRQFFTVGQQPQTQIPITTSAG
VVYPGAITMATTTPSPHMTSDCSSASASPEPTIPVIQSTFNMKMEPGTMMPNDPTVNGED
EMDMYDDFEDEPKSDYSSENDTQEPVSAN
NT seq
2430 nt
NT seq
+upstream
nt +downstream
nt
atgccatccagctctgaagtgatgtttgaggaacacagaagatcacagagggacaatatc
agaatcatgtcttccaagcaagccacctccccgttcaccacgacccctgacggaggtgag
gatggagtgaatcaggagcgcatgtcctgggaaaaagaggagaacttagaggcgctggct
cctcctctgcacagtctgatccacaacaaacctcctccggaggagctaccgccaatcagc
agcagcgtgccgcccgaatccgactgggacagtctgctgtcggcccagcagcgcatggaa
tcggacagcaataaagtatgttccttgtactccttccggaataactctacctctccactc
aagccagatgaggggggcagggagcgcggcgacctgctgagcagctcagcttttggaacg
ccagagcgtcgcaagggaagcctggccgatgtggtggacacactgaagcagaagaaacta
gaggagatgacaaagacagagcaagatgaatcctcctgcatggagaaactcctttctaaa
gactggaaagagaagatggatcgacttaacacgggcgaactgtttggagaaattaaaggt
acacccgaaagtctcgccgagaaggaacgacaactctccaccatgatcacgcagctcatc
agcctaagagagcagctcctggctgcccacgatgagcagaagaaactggccgcctcacag
atggagaaacagcgtcagcaaatggagctggcgcgccaacagcaagagcagatcgcaaga
caacagcagcaacttctgcagcaacagcacaaaatcaatcttctccagcagcagatccag
caggtccagggtcacatgcctccgctcatgatccccatttttccacacgaccagcgcact
ctggcagcagccgccgcggcccagcagggcttcctcttccccccaggcatgtcctacaaa
cccggtgataactacccagtgcagttcattccatccacaatggcagctgctgccgcgtca
ggactcaaccctctccagctccagcaactctacgccgcccagctggccagcatgcaggtc
tctccaggagccaagatgccaccgctgccccagccccctaactctggtgggcccatctcc
ccctctggcttgaagaatgagaagagagcttctacccccctcactcaaattaaggaggag
ggaacgcagcctctcaacctctccgcccgacccaaaacagctgagccggtcaaatctcca
acgtcccctacacagagcctcttctccggcagcaagagcagcccgaacagtctatctaag
agcggaggaatccccagcccccttggaggattgggtcgcggttcatcactggatatcctg
tccagcctgaactcaacagcgctgtttggagatcaggacgcggtgatgaaggccatccag
gaagcgaggaagatgagagaacagatacagagagagcagctacagcatcatcagcaggga
atggaggccaagctctctgccctcaccggcatgagcctgaacaactgcagggctgacaag
gagaggtctcattatgaaagcctgggacatcacttgggtaaacttggcgaggatggaaag
atcggtcacagggtcatcgaccttacccgaccagaggatttcgaagggagtaaggaactt
aatgggtccgcagataaaccacatcagtattattgttggccaacaggaggcgccagctct
gccgaggcacgggtctacagggaaccccggggacggaacaacaacgaacctcacatcaaa
cggcccatgaacgccttcatggtctgggcaaaagacgagcgtcgcaaaatcctccaggcc
ttcccagacatgcacaactccaacatcagcaaaatcttggggtctcgctggaagtccatg
acgaaccaagagaaacagccctactatgaggagcaggcccgcctcagcaagatccacctg
gagaaataccccaactacaagtacaagccgcggcccaagcgcacctgcatcatcgacggc
aagaagctgcgcatcggcgagtacaagcagatgatgaggtcgaggaggcaggagatgagg
cagttcttcactgtggggcagcagccacagacgcagatccccatcaccaccagtgcaggt
gtcgtctaccctggtgccataaccatggcgaccaccacgccctcccctcacatgacgtcg
gactgctccagcgcctcagccagccccgaacccaccatccctgtcatccagagcaccttc
aacatgaagatggaacccggcaccatgatgcccaacgacccaacggtgaacggcgaggat
gagatggacatgtacgacgactttgaggacgagcccaaatcggactacagtagcgagaat
gacacacaggagcccgtcagtgccaactga
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