Paramisgurnus dabryanus (large-scale loach): 135731922
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Entry
135731922 CDS
T10799
Symbol
pdzrn3a
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
pdab Paramisgurnus dabryanus (large-scale loach)
Brite
KEGG Orthology (KO) [BR:
pdab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pdab04121
]
135731922 (pdzrn3a)
Enzymes [BR:
pdab01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
135731922 (pdzrn3a)
Ubiquitin system [BR:
pdab04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
135731922 (pdzrn3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C3HC4_2
zf-C3HC4
zf-TRAF
zf-RING_2
zf-RING_UBOX
Sina_ZnF
zf-C3HC4_3
zf-C3HC4_4
zf-RING_5
Prok-RING_4
zf-rbx1
U-box
RING_XB3-XBAT31
Motif
Other DBs
NCBI-GeneID:
135731922
NCBI-ProteinID:
XP_065105908
LinkDB
All DBs
Position
21:complement(21459570..21500541)
Genome browser
AA seq
870 aa
AA seq
DB search
MGFELDRFESAVDLDLICKLCGKVVEEPLATPCGHVFCAACVLQWLSKVHSCPIQCQKIT
SSDLNHVLPLKNLIFKLDVKCDHRDRGCKKVMKLQHLSEHTDTCDFSPVRCGNEGCGAVI
HLKDVASHVRETCAYRPAEICEDGCGLMLTIKEITEDHSCLQALNARNGLLQNKVMALER
ELKRRCLRFNMRERSLLTKLSALHYELNTTARRFQEKITEYKSRFDALANSSNKGDNTMT
VKVTLHRASGSLGFNIIGGRPNEANGRNLSQGTHDHAVETFQTAEEPNEVQIRCRTAHKT
QGVDSSTQTNITLKYLKHLEDKLSSPSLPLGLAVLDSYLSPTGIQRDIKSRGLDHEIDAE
GVAAEDGRIQQADPIIQSLHKEDGGTTDMANMLSNRHEKDSGVSRTDDSNRNDESSEPEI
LGDDLSFVWDTLPGNHKKYFSQDTIGSGDLHLCNDSFLSVDNVDCEKVLDIPGMACEDLR
ELLELKFLLNGNSPCEYLEHDARLYRESISWDCDDLDIQMLSEELLNIELECLSIIQAHR
IQTGEGLQSSNDSRTKHLTKQSVEKVHQDLINKKVDKESSSAYNTGESCWSIPPAVELSD
FQNLVTEDKGKSSPKHRRNSTTATCSKHLLSPIQEATPTKSNSPSGNSEATKVEKTKQKW
KNHPGKRHSPYKNTYIPAHAQHYQSYMHLIQQKSAVEYGQSQISLASLCKNPETFPSDSR
PKMEWKVKIRSNGTRYITKRPTRDQLLKERALRIREERCGMTTDDDAASELKLGRYWNKE
ERKQHAAHAKEQRQQRELRKQCCVEGKEQAAAKKDNITPDIIQLSHKKMMKKRNKRILDN
WMTIQELLTHGTRSTDGTRLYNSFLSVTTV
NT seq
2613 nt
NT seq
+upstream
nt +downstream
nt
atgggctttgagctcgatcgttttgagagcgcagtggatctcgacctcatctgtaaactg
tgtggaaaagttgtggaggagcctctggccaccccgtgtggacacgtcttctgcgccgca
tgcgtgctccagtggctctccaaagtccacagctgtcccatccagtgccaaaagatcacc
agcagcgaccttaatcacgtcctgcccctgaaaaacctcatcttcaaactagatgtgaaa
tgtgatcaccgtgatcgaggctgtaagaaagtgatgaagctccagcatctctctgagcac
acggacacatgcgacttttctccggttagatgcgggaatgaaggatgcggcgcggtgatc
catctgaaagacgtcgcatcacacgtgcgggagacatgcgcatacagaccggcggagatt
tgtgaggatggatgcggactgatgctcaccatcaaggagatcacggaggaccatagttgt
cttcaagcgctgaatgcgcgcaacgggcttctccaaaataaagtgatggcgttggaaaga
gagctgaagcgacggtgtttgaggtttaatatgagggagagatcgctcctcaccaaactt
tcagcgcttcactacgagctcaacacgacagcgcggagatttcaagagaaaatcaccgag
tacaagagcagatttgacgcgctagcaaacagctccaataagggagacaatacaatgacc
gtcaaagtgaccctccacagagcatcaggatctctgggatttaatatcattggaggacgg
ccaaatgaggcaaatggaaggaacctttcccagggcacccatgatcatgcagtagagacc
tttcaaacagccgaagagcccaatgaggtccagatacggtgcaggacggcacacaaaact
caaggagtggacagcagtacacaaaccaacattactctgaaatatctgaaacatttagag
gataaactgtcctctccatcattgccactgggtttggccgtgctggatagttacctttca
cccacaggcatacagagagacattaaaagcagaggattggatcatgagattgatgcagaa
ggtgttgcagctgaagatggcagaatccagcaagcagatccgattatccagagcctgcat
aaagaagatggaggtactactgatatggcaaatatgctgtccaaccgtcatgagaaagac
agcggtgtgagccgcacagatgacagcaatcgtaatgatgaaagctcagagccagagatc
ctgggggacgacttgagctttgtttgggacactcttccaggaaaccacaagaagtacttc
agccaggacacgataggcagtggagacctgcacctgtgtaatgactccttcctgtctgtt
gacaatgtagactgtgaaaaagtcctcgatatacccggcatggcttgcgaggacttacga
gaactgcttgaattgaaattcctgctgaatggaaacagtccttgtgaatatctggagcac
gatgccaggctatacagagagagtattagttgggattgtgatgaccttgatattcagatg
ctcagtgaggaactgctaaacattgaacttgagtgtctaagcatcatacaggcacataga
atacaaacaggggaaggtctacaatccagcaatgattcacgtaccaagcaccttaccaag
caaagtgtggaaaaagtccatcaagacctcattaataagaaagtggacaaggaaagctct
agtgcctacaacactggagaaagttgttggagcattcctcctgctgtagaactttcggac
ttccaaaatttggttacagaagacaaagggaaaagttctcccaagcatagacgcaactca
acaacagcaacatgctcaaagcatcttctttctcctattcaggaggctacccccaccaaa
agtaactctccttcaggaaactcagaggccacaaaagtggaaaaaactaagcagaagtgg
aagaaccacccagggaaaaggcattccccatacaagaacacctacatcccagctcatgca
caacattaccaaagctacatgcaccttatccagcaaaaatcagctgttgagtacggccaa
agtcaaatcagcttagccagcttgtgcaagaacccagagaccttcccctcggactccaga
cccaagatggaatggaaggtaaagatccgtagtaatggaacacggtacatcaccaaaagg
cctacgagggatcaactgctgaaagagcgtgcattgcgcatccgagaagaacgctgtggc
atgacaaccgatgatgatgctgcaagtgaactcaaactgggtcgatactggaacaaggag
gagcgcaagcagcatgcagcacatgccaaggaacagcggcaacagagggaactcaggaag
cagtgctgcgtggaaggcaaggagcaggcagcagctaagaaggacaatataacgccagat
attatccagctcagccacaaaaagatgatgaaaaaacggaataagagaatactcgacaac
tggatgactattcaggagctgctgacacatggcacaaggtccacagatgggacaagacta
tataattcctttctttctgtgacaacggtgtaa
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