Paramisgurnus dabryanus (large-scale loach): 135732210
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Entry
135732210 CDS
T10799
Symbol
shoc1
Name
(RefSeq) protein shortage in chiasmata 1 ortholog
KO
K28108
shortage in chiasmata 1
Organism
pdab Paramisgurnus dabryanus (large-scale loach)
Brite
KEGG Orthology (KO) [BR:
pdab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pdab03036
]
135732210 (shoc1)
Chromosome and associated proteins [BR:
pdab03036
]
Eukaryotic type
Meiosis-specific proteins
Others
135732210 (shoc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF5587
Motif
Other DBs
NCBI-GeneID:
135732210
NCBI-ProteinID:
XP_073670918
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All DBs
Position
5:35419514..35445934
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AA seq
1409 aa
AA seq
DB search
MMKNFLELPVPFQLLSNIYPHNGHLQDIKYRAPWSNKISTCKLHVTGSVMEDLMENTRFG
DSLERFDVFQVQTGSGLEEVVPSSNPASQCSIGDTEALWHIDKVESSENRSTWDESFSPC
TPDAFCFSCNDLTLPEDVIFADHLRFKSHLPSIHTMLQRLKVMTVSDPLLHLPVMPSEDL
IFRHCASYTEVLDKVPDTAVTGEVTEVFIKERVLNEESLMLPVEVLMESVQRKEVSFSVA
KLQDMLNLIPEPVEETDLQMEVSNDPVPCLGSEEDVLRCVRLNAGLLRPIVDKHKTGVEA
LQIKESSCTYDSFKEPNSPVALRVYTEMELDLVLSPCNDTLPDRFLSAEQLSAEQLSPVY
KQHLLSDSECENMEKAVWMAEKHHECVAGFLLAEPQTVRPSIHYHTLPDLLMLLTVKREH
VESNENMGQFYLTDITAVLPEPSFTDLSVYTENNHAAKIEALKNETFSPLSIMQIDEMLF
AVHTALPRPDGSTTVQPNHPQTAETVQVDAEKTLKPFRTEHISCHAETTKETDCNTAQVK
QQMSNPTSFKPTKPERCSEIQRNCSVTTCTSGEPLDISEMLEMFKSSPLRHKHTEVISTV
TKPPEQRREGTTCKSVDRSKDRHVNSSAAKSHQSLDPFSSFIWLRTLQKSPIPTPQKSSP
TSTEMNVSRSPRGKALPVLRVNAADKVLDTKNNVTATETRLPSEERPISRTIHVQATETQ
RNAYRELKMLGLPCLNKAHESGVSGLNNRDFDTLSPELTRFLLKQQERTLQTQQGGDCVL
DDITLLHTLVSLKELLLKSDLHAAIDYLARVKTSCALNCLDELMKKFEVLLYLSQKRPEP
DPKLLELQDQISTWINSHHDHNTKALVLTLNTGTTKVFAALSQVLGDSVYVLVPKEGNCK
VTSREVMESLSMSRCFVLCRQNIGPDFPWQCFILVFEIHCVDHSPFSSVCSERKITYISF
STAVPEFKDGNTASYLDSIPFVLFVTDGLLKRSRIQRALETTYDMTLLERKHPPCAQKLG
GADYDVITVDENTAVLIQEVSELEMEKASYRVVMRLSALSLQFTRCWLILHCDESHRALI
SSSVYLNLVHIYSSFVLFGHKSKKFDVKVLLVCEEEEIARYIYQICLHTLMSSDRDALSW
LDRDWLSVQPTEAEHCLLQFPCINPLVAQLMLTRAPSLQWLLRASLVELQEMLSQVPHKV
IKIFSDITAKHNMKMAASECENKASLQTNIFDHHHPQTDACHSQQPVYFTESLSGQQEDK
MPVSRFGDLIGQCLCRQEDHISDQAQASTNSHTQLKMGLFSQDSASLNVWQTQDERCIHS
NPDLVPKQAAVLSSPQVPDSRNSVFEVSCRRQSQTHWRSPENITDQKTAERKRPRTEDVH
TVFPHHKRGKLLCEKVPGRNDGQTRLRFF
NT seq
4230 nt
NT seq
+upstream
nt +downstream
nt
atgatgaagaactttttagaacttccggttccgttccagctgctcagtaacatctatcct
cataatggacatctgcaggacatcaagtacagagcaccatggagtaacaaaatctccacc
tgtaagctacatgtgactggatctgtaatggaagacttaatggaaaacacacgttttggt
gacagtttggaaagattcgatgtgttccaggtgcagacaggaagtggactagaggaagtg
gtacccagctctaaccccgcctctcagtgcagtattggcgatacagaagcgctctggcat
atagataaagttgagagcagtgaaaacagatcaacatgggatgaaagttttagtccatgc
acgccagatgccttctgcttcagttgtaatgatctcactctgccagaggacgtgatattc
gctgaccatctgaggttcaaaagccacctgccttcaattcacacaatgctgcagaggcta
aaggtcatgactgtgtcagatcctttgctccatttaccagtaatgccttcagaagatctc
atttttagacattgtgcctcgtacactgaagttttagacaaagttcctgataccgcagtg
actggagaagttacagaggtgtttatcaaagagagagtactgaacgaggagtcactaatg
ttacctgtagaagtccttatggaatctgtacagagaaaagaggtcagtttttcagtcgca
aagctgcaagacatgctaaatctaattccagaaccagtggaagagactgaccttcaaatg
gaagtgtctaatgaccctgtgccttgtcttggttctgaggaagatgtgttaagatgtgtt
cgacttaatgccgggctgcttagacctatcgttgataaacacaagactggagtggaggct
ctgcaaattaaagaaagcagctgtacttatgattcctttaaagagccaaactctccagtt
gctttgagggtgtacactgaaatggaattggatctggttctttcaccgtgtaatgatacg
ctaccagaccggtttctgtccgccgagcagctatcagctgaacagctgtcaccagtttat
aagcagcatttgttgtcagacagtgaatgtgaaaatatggaaaaagctgtttggatggca
gagaaacatcacgagtgtgtggctggatttttacttgctgaaccgcagacggttaggcct
tcgattcactatcacacactccctgatcttctcatgctcttgacggtgaagagggaacat
gtcgaatccaacgagaacatgggccagttttacctcactgacatcacagcggtacttcca
gagccgagctttacagatctctctgtttataccgaaaacaaccacgcagccaagattgag
gcacttaagaatgaaacattctctccattgtccatcatgcaaatagatgagatgctgttt
gctgtacatacagccctgccacgtccagacggttccaccacagtccagccgaaccatcca
cagacagcagaaactgtacaggtagatgcagagaagactctgaagccctttagaacggag
cacatatcttgccacgcagaaaccaccaaagaaaccgactgtaacacagcacaagtaaag
cagcagatgtctaatccaacctcctttaaacccacaaaaccagaaagatgctctgagatt
cagagaaattgctctgtaaccacgtgtacttcaggagagccactcgacatttctgaaatg
cttgagatgtttaaatcatctccattgaggcataaacatactgaagtgatatcaactgtg
accaaacctcccgagcaaagaagagaaggaactacctgtaaatcagtagaccgttcgaaa
gacagacatgttaatagttcagctgccaaatctcaccagagcctggaccctttttcttct
tttatttggctaagaactttgcagaaaagtccaatcccaacacctcaaaagagcagtcca
acatctacagagatgaatgtgagtcggagtcctagaggaaaggctttgcccgtcctgaga
gtgaatgcagcagataaagtcttggatacaaaaaacaatgttacagccacagagacaaga
ttacccagtgaagagagacccatcagcaggaccatacacgtccaagccacagaaactcag
agaaacgcgtacagggagttgaaaatgttgggtctgccatgtctaaacaaagcgcacgag
tctggcgtatccggtttgaacaacagagattttgatactctctcacctgaactcacgcgg
ttccttctgaagcaacaagagagaacgcttcagacacaacagggtggggactgtgtgctt
gatgacatcacgctgctgcatactcttgtctcactgaaggaacttctgcttaaaagtgac
cttcacgcggccattgattacctggctcgagtaaagacctcctgtgctctgaactgtctg
gatgagctgatgaagaagtttgaggtgttgctgtatctcagtcagaagagaccagagcct
gacccgaaactgctggagctccaggatcaaattagcacatggataaactctcatcatgac
cacaacaccaaagctctagttttgacgttgaacactggaaccacaaaagtgttcgcagct
ctcagccaggtattaggtgactctgtgtatgtcctggttcctaaagaaggaaactgtaaa
gttacgagcagagaagtgatggaaagtctttccatgagcaggtgttttgtgttgtgccgt
cagaatattggtcctgatttcccatggcagtgtttcatcctggtgtttgagattcactgt
gtggatcactcacctttcagcagtgtgtgttcagagagaaaaatcacatacatctctttc
agcacggctgtgcctgagtttaaagacggcaacactgcgtcatatctggactcaattcca
tttgtgctgtttgtcactgatggtttactgaaacgctcgaggattcagcgtgctctggag
acgacgtatgatatgaccctgctggagaggaaacaccctccttgtgcacagaagctgggt
ggagccgattatgatgtcatcactgtggatgagaacactgccgtgctaatccaggaagtg
agcgagctggagatggaaaaagcatcttatcgtgtggtcatgagactgtccgctttgtct
ctgcagttcacgcgctgctggctcatccttcactgcgatgagagtcacagagcactgatt
tccagcagcgtctatttaaatcttgttcatatctactcatcatttgtgctgttcggacac
aagtctaagaaatttgatgtcaaggtgttactagtgtgtgaggaagaagaaatagctaga
tacatctatcagatctgtctgcatacgctgatgagttcagacagagatgctctcagctgg
ttggatagagactggctcagtgtgcagcccacagaggctgagcattgcctgctgcagttt
ccctgtatcaatcctctggtagctcagctgatgttgacgagagctccgtccctccagtgg
ctcctgcgagcttctcttgttgagctacaagaaatgttatcacaagttcctcacaaagtc
ataaagatcttcagtgacataacagctaagcacaatatgaagatggctgcatcagagtgt
gaaaataaagcttccttgcagacaaacatcttcgatcatcatcatccacagacagatgcc
tgtcactcacaacagcctgtatacttcacagagtctctgtctgggcagcaggaggataaa
atgcctgtcagccggtttggcgatctgattggtcagtgtctgtgtagacaggaggatcac
atttcagatcaagctcaggcttcaacaaactcacacacacagttaaagatgggtctgttc
agccaggactcagcttcactgaatgtctggcagacacaggatgaaagatgcattcattcg
aacccagatctagtgccaaaacaagctgctgtcctctcaagccctcaggtgccggactcc
aggaacagcgtatttgaagtgagctgtagacggcagagtcagactcactggagatcacct
gagaacatcactgatcagaagacagcagaaagaaagagaccgaggactgaagatgtgcac
actgtgttcccacatcataagagaggaaaactgctttgtgagaaagttccaggcagaaac
gacggacagaccagactgaggtttttctga
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