Paramisgurnus dabryanus (large-scale loach): 135732676
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Entry
135732676 CDS
T10799
Symbol
rfc5
Name
(RefSeq) replication factor C subunit 5 isoform X1
KO
K10756
replication factor C subunit 3/5
Organism
pdab Paramisgurnus dabryanus (large-scale loach)
Pathway
pdab03030
DNA replication
pdab03410
Base excision repair
pdab03420
Nucleotide excision repair
pdab03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pdab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
135732676 (rfc5)
03410 Base excision repair
135732676 (rfc5)
03420 Nucleotide excision repair
135732676 (rfc5)
03430 Mismatch repair
135732676 (rfc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pdab03032
]
135732676 (rfc5)
03036 Chromosome and associated proteins [BR:
pdab03036
]
135732676 (rfc5)
03400 DNA repair and recombination proteins [BR:
pdab03400
]
135732676 (rfc5)
DNA replication proteins [BR:
pdab03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
135732676 (rfc5)
DNA Replication Termination Factors
ELG1-RFC complex
135732676 (rfc5)
Chromosome and associated proteins [BR:
pdab03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
135732676 (rfc5)
DNA repair and recombination proteins [BR:
pdab03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
135732676 (rfc5)
Check point factors
HRAD17(Rad24)-RFC complex
135732676 (rfc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
Rad17
AAA_14
RCF1-5-like_lid
AAA_22
AAA_11
AAA_24
RuvB_N
ResIII
AAA_16
AAA_assoc_2
DEAD
DUF815
PhoH
AAA_19
AAA_30
AAA_7
ATPase_2
TIP49
AAA_5
TniB
Thioredoxin_6
DNAX_ATPase_lid
AAA_2
Mg_chelatase
nSTAND3
bpMoxR
Motif
Other DBs
NCBI-GeneID:
135732676
NCBI-ProteinID:
XP_065106997
LinkDB
All DBs
Position
5:37134818..37146102
Genome browser
AA seq
334 aa
AA seq
DB search
MASTSKSQNQTRNLPWVEKYRPQTLDDLISHQDILSTIQKFISEERLPHLLFYGPPGTGK
TSTILACAKQLYKDKEFNSMVLELNASDDRGIDVVRGPILSFASTRTIFKKGFKLVILDE
ADAMTQDAQNALRRVIEKFTENTRFCLIGNYLSKIIPALQSRCTRFRFGPLSQNQMIPRL
EHVIQQESIDITPDGMKAIVTLSTGDMRRSLNILQSTHMAYGKVTEETVYTCTGHPLRSD
IANILDWALNKDFTTAYNQILHLKTLKGLALHDILTEVHLLIHRVDFPPSIRMGLLIKLA
DIEYRLASGTNEKIQLSSMVAAFQAVRDIVVSDG
NT seq
1005 nt
NT seq
+upstream
nt +downstream
nt
atggcatcaacgagtaagtcgcagaaccagacaagaaatttaccatgggttgaaaagtac
agacctcagacactggatgatttgatctctcaccaagacatactgagcacaattcagaag
tttatcagtgaagaaagactgcctcatctgcttttctacggccctccgggaacaggaaag
acctcaactatactcgcatgtgctaaacaactttacaaagataaagagttcaactccatg
gtcctggagctcaatgcttcagatgaccgtggtatagatgtggtaagggggccgatccta
agctttgccagcacgcggaccatttttaagaaaggctttaagttggtgatcctggatgag
gcggatgctatgacccaggatgcacaaaacgctttaaggagagtcatagagaagtttaca
gaaaacacacgtttctgtctcatcggtaactacctgtctaagatcatacctgcgctgcag
tctcgctgtacgcgcttccggttcgggccgctctctcagaaccagatgattccccgactg
gagcacgtcatacagcaagagagcattgacatcactccagatggcatgaaggccattgtg
accctctcgacaggagatatgagacgatcgttgaacattttacagagtactcatatggcc
tatggaaaggtgacagaggagactgtgtacacgtgtactggacatccgctgagatcagac
atcgctaacatactggactgggcccttaataaagactttactacggcatataatcaaatt
ctccacctcaaaactctgaaaggtcttgcactccatgacattttaactgaggtccatctt
ctcattcatcgtgtggacttcccaccctccattcgtatgggcttgcttataaaacttgca
gatattgagtatcgtctggcctctggaaccaatgagaagatccagctcagctcaatggtc
gctgctttccaggcagttcgagacatagtagtcagcgatggatag
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