Paramisgurnus dabryanus (large-scale loach): 135732749
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Entry
135732749 CDS
T10799
Symbol
ythdc2
Name
(RefSeq) 3'-5' RNA helicase YTHDC2
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
pdab Paramisgurnus dabryanus (large-scale loach)
Brite
KEGG Orthology (KO) [BR:
pdab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pdab03041
]
135732749 (ythdc2)
Enzymes [BR:
pdab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
135732749 (ythdc2)
Spliceosome [BR:
pdab03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
135732749 (ythdc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
OB_NTP_bind
Helicase_C
HA2_C
R3H
DEAD
Ank_2
Ank
HA2_N
AAA_19
ATPase
nSTAND3
AAA_22
PhoH
Ank_4
Ank_5
AAA_7
ABC_tran
Motif
Other DBs
NCBI-GeneID:
135732749
NCBI-ProteinID:
XP_065107101
LinkDB
All DBs
Position
5:31613343..31632797
Genome browser
AA seq
1407 aa
AA seq
DB search
MFRHGGTPKSKMTASKQTLKAKGLKDIRIDEEVKIAVNISLERFLHSDEKELDFPSSLTN
TERAFIHRLAQSLGYISKSRGKGNSRYLTVRKKDGTEMARSVMTCDLTYNSKHVVGNLLH
RFPISSKERTELLPRTERNTSSDTGDGKSRTSGRLSHGISQVPQKRGPSELDGFRRALPV
YERQNEIVQTIKENQVVLVLGETGSGKTTQIPQFLLDDCSRNEIPCRIFCTQPRRLATIA
VAERVAAERGEKIGQTVGYQIRLESRVSPKTLLTFCTSGVLLRTLMAGDDALSTVTHVIV
DEVHERDGLTDFLLTKLKDVLNKMPSMKLILSSAALDVSLFVRYFKAPPVVYIKGCPFDV
KQLFLEDILRTTGYANKEMMKYKKEVQREAKQQMSLTEWCDARPTVLQRECPREKPSTCV
LQDSDLLDDGGDSVFSQLSEKDVATLEPWLLREMDTCISEIFLKQDADTFVQLFNLILNE
NISVDYRHSETSATPLMVAAGRGFLSQMEQLLSMGANVNIKASNGWTALDWAKHFNQSEA
VDLLESHMGCVEAGQPDESSLDQTAGSDLSSEDQELLKAYHHSFDDERVDLDLILHLLFN
ICQSSNEGAVLIFLPGYDEIVSLRDRIIFDDKRFTEYQQRLQVFILHSSMQTSDQKKVLN
NTPKGVRKVILSTNIAETSITVNDVVFVIDSGKVKEKAYDALNNVTMLKMVWISKASALQ
RKGRAGRCRPGISFHLFSRLRFKNMLEHQVPQLLRMPLQELCLHTKLLAPITCSIAEFLS
KAPEPPHLHAVKNAVQMLKTIDAMDPWEDLTELGYHLADLPVEPHLGKMVLCAVVLKCLD
PILTIACTLAHRDPFVLPTQASQKRLAMLCRKRFCANTFSDHMALLRAFQAWQKARSDGW
ERAFCEKNFLSQATMEIIVGMRAQLLGQLRATGFVRARGGGDIRDVNLNSENWAIVKAAL
VAGMYPNLIHVNRENLTLMGFKEKNVRFHPTSVLSQPQYKKIPPANGQAAAVESLPTDWL
IYDEMTRAHRIASIKCCSAVTPLTLALFGGCARLPSTALQEPTAYDGAGDGVNESSDSEM
EDRSGAHLTSIKIDEWVNFNLDQETAKLVFGLRQRWQSLFLRRIRAPSKASSQLDEATIR
TLVSVLSAEEQTAGLQQPTGIGQRPRPMNSDDSPQSSSWKSGSAGRRSAADLQQGAGELS
SPDRSPRLTSHVSQAKPHREKTHQSKRLGEEHLPFKSASSPLLNSPSAGLLSSGKCSSPR
QTRACLRYFIMKSSNMKNIELSQKKGIWSTTPNNEQKLNRAFLESSAVFLIFSVQGSGHF
QGYARMTSEISSERCLDWGSAGLGGVFSVEWVRKEILPFQHTQQLLNPWNDNKKVQISRD
GQELESQTGSQLLELWDKITSKHLPEV
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
atgttccggcacggtggaaccccaaagtcaaaaatgactgcgtctaaacagactctgaaa
gctaaagggctcaaagacatcaggattgatgaagaggttaaaatcgctgtcaatatctct
ctggaaagattcctacacagtgatgagaaagagttggattttccttcttcgctgactaat
accgagcgagcgttcatacaccggcttgctcaatctctggggtacatttccaaaagccga
ggaaaaggcaatagtcgatatctcacggtgagaaagaaagatgggaccgagatggctcgc
tctgtcatgacctgtgacctcacttacaactccaaacacgtggtaggaaaccttctgcat
agattccccatcagcagtaaggagcgcacagaactgctgccacgaacagagagaaacacc
tcttcagacacgggtgatggtaagagcagaaccagcggtcgtctgagtcacggtatttct
caggttcctcagaaacgcggcccgtctgaactggatggttttcggagagcgctgcctgtg
tatgagcgacagaatgagattgtacagaccatcaaggagaaccaggttgtgctggttttg
ggtgaaactgggtcaggtaaaaccacacagatcccccagtttcttctggatgactgcagc
cggaatgaaattccctgtcggatcttctgcactcagcccaggagactggcgaccattgct
gtagcggagcgagtggcggctgaacgcggggagaagatcggacaaaccgtcggttatcag
atccgcctggagagcagggtttcccccaaaaccctcctgacgttctgcaccagtggagtg
ttgctgagaacactgatggccggagacgacgccctatccaccgtcacacacgttattgtg
gacgaggttcacgagcgtgacggtctgacggattttttactcactaagctgaaggacgtt
cttaataagatgccctcaatgaaactcatcctgtccagcgccgctctggatgtcagtctc
ttcgttagatactttaaagcacctcctgttgtttacatcaaaggttgcccttttgatgtc
aagcagctcttccttgaagatatcctaaggacaacaggctatgcaaacaaagagatgatg
aaatacaagaaggaggtgcagagagaggcgaagcagcagatgtctttgacagaatggtgt
gacgcccgtccgacggtcttacagcgcgagtgtccgagggaaaagccgtccacctgtgtc
ctacaggacagtgatctcctggatgatggaggggacagtgtcttcagccagctgagcgaa
aaagacgtggccacactagagccctggctgctcagggaaatggacacctgcatctccgag
attttcttgaagcaagatgcggacaccttcgtgcaactcttcaatctcatcctgaacgaa
aacatcagcgtggactacagacacagcgagaccagtgccactcctctgatggtggccgca
ggaagaggctttctcagtcagatggagcagctcttaagtatgggtgccaacgtcaacatc
aaagcctcaaacggctggacggctctcgactgggccaaacatttcaatcaatcggaggct
gtagatctcctggagtctcacatggggtgtgttgaagcgggtcagccggacgagtcgtct
ctggatcagacagctggttctgatctgagctcggaagaccaggagctgctcaaagcgtat
catcacagctttgatgatgagagagtcgacctggacctcatcttacatctgctcttcaac
atttgccagagctccaatgagggcgcggtattgatattcctgccgggctatgatgagatt
gtctctttaagagaccgcatcatttttgacgataaaagatttacagaataccagcaaagg
ttgcaggtgttcattctgcactcaagcatgcaaacatccgatcagaagaaagttctgaat
aatactcctaaaggtgttcgcaaagtaattctctccactaacatcgcagaaaccagcatc
acggtcaatgatgtggtgtttgttattgactctggaaaagttaaagagaaggcctatgat
gctctcaataatgtgaccatgctgaagatggtttggatatcgaaggcaagcgctttgcaa
agaaagggcagagcgggtcgctgtagaccaggcatcagtttccacctcttcagccggctg
agattcaagaacatgctggaacatcaggttcctcagctgctccgtatgccactgcaggag
ctctgtctgcatactaaacttctggctcccatcacctgctccatcgctgagtttctgtcc
aaagcacctgaacctccacacctacacgcagttaaaaacgctgtacagatgctcaagacc
atcgatgccatggacccctgggaggacctgactgagttgggttatcacctcgctgacctg
cccgtggagcctcatctggggaagatggtgctgtgtgccgtggttctgaagtgtctggat
cccatcctcaccatcgcctgcacgctggcccacagagatccgtttgtgttgcccacgcag
gcctctcagaagcgactggccatgctgtgcaggaaacgcttttgtgccaacactttcagc
gaccacatggctctgctcagagcatttcaggcttggcagaaggcacgcagtgatggatgg
gaaagagctttctgtgagaagaacttcctctctcaggccaccatggagatcatcgtaggg
atgagagcacagctcctgggtcagctgcgagctacaggtttcgtacgagcacgaggaggc
ggagacattcgcgatgttaatctgaactctgagaactgggccatagtaaaggccgcgctg
gtcgccggtatgtatcccaacctgatccacgtgaaccgcgaaaacctgaccctcatggga
ttcaaagagaagaatgtccgatttcatccgacctctgtcctgagtcagccgcagtacaag
aagattcctccagccaatggtcaggcagcagcagtggagtccctgcccaccgattggctg
atttatgatgagatgacccgagctcataggatcgccagcatcaagtgctgctccgctgtc
acacctctgaccttggccttatttggaggatgtgcgagactcccgagcacagcgttacag
gagcccacagcttacgatggagcaggtgatggtgtgaatgaaagcagtgacagtgagatg
gaggatcggtcaggtgctcatcttaccagcatcaagattgacgagtgggtgaactttaat
ctggatcaggagacggccaagctggtgttcggccttagacagcgatggcagagtttgttt
ttgaggaggattcgagctccgtctaaggccagttctcagctggacgaggccaccatccga
acgctggtgtcggtgctgtcggccgaagaacagacggcgggtcttcagcagcccaccggc
atcggacagagacctcgacccatgaactctgacgacagcccgcagagctcatcctggaag
agcggcagcgcaggtcgaaggagcgcagcggatctacagcagggcgctggcgagctgagc
agcccggacagatcgcctcgtctgacctctcacgtgtctcaagcaaaacctcacagagag
aaaacccatcagtcgaagcgtctgggagaggaacacttgccctttaaaagtgcgagcagc
ccgttgctcaacagcccctctgcaggcctcttgtcctctggaaagtgctcgtcgccgaga
cagacgcgagcgtgtctgagatacttcatcatgaagagcagcaatatgaagaacattgag
ctgtctcagaagaaaggcatctggtccaccacaccaaacaatgaacagaaactgaaccga
gccttcttggagagcagcgctgttttcctcatcttctccgtacagggatctggacacttc
cagggttatgcccgcatgacatccgagatcagcagtgagagatgtctggactggggttca
gccggtttaggaggcgtgttcagtgtggagtgggttcgtaaagagattcttcccttccaa
cacacacagcaactcttgaacccgtggaacgataacaagaaggttcagatcagccgagat
ggacaggagttggagtctcagactggaagtcaactgctggagctatgggacaaaatcact
tcaaaacatctgccggaggtctaa
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integrated database retrieval system
