Paramisgurnus dabryanus (large-scale loach): 135733199
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Entry
135733199 CDS
T10799
Symbol
prkn
Name
(RefSeq) E3 ubiquitin-protein ligase parkin isoform X1
KO
K04556
parkin [EC:
2.3.2.31
]
Organism
pdab Paramisgurnus dabryanus (large-scale loach)
Pathway
pdab04120
Ubiquitin mediated proteolysis
pdab04137
Mitophagy - animal
pdab04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pdab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
135733199 (prkn)
04120 Ubiquitin mediated proteolysis
135733199 (prkn)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
135733199 (prkn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pdab04131
]
135733199 (prkn)
04121 Ubiquitin system [BR:
pdab04121
]
135733199 (prkn)
03029 Mitochondrial biogenesis [BR:
pdab03029
]
135733199 (prkn)
Enzymes [BR:
pdab01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
135733199 (prkn)
Membrane trafficking [BR:
pdab04131
]
Autophagy
Mitophagy
PINK1-Parkin associated proteins
135733199 (prkn)
Aggrephagy
Other aggrephagy associated proteins
135733199 (prkn)
Xenophagy
Other xenophagy associated proteins
135733199 (prkn)
Ubiquitin system [BR:
pdab04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
135733199 (prkn)
Mitochondrial biogenesis [BR:
pdab03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
135733199 (prkn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_14
zf-RING_12
IBR_2
ubiquitin
IBR_1
IBR
Sina_RING
Rad60-SLD
Dsc3_N
Motif
Other DBs
NCBI-GeneID:
135733199
NCBI-ProteinID:
XP_065107629
LinkDB
All DBs
Position
20:complement(27589806..27729310)
Genome browser
AA seq
458 aa
AA seq
DB search
MIVYVRFNSSHGFPVELEQGASVADLKEAVGRLQGVEPGHLRVIFAGRELCSESTLQGCD
LPEQSTVHVVLPPSGSAQRSELVLQRRLDDGVASLTRLDLSPSRLTTASEGLAFILETDA
SGQRNPSRHAESRVHSSFYVFCKTICKSIQPGKLRVRCKDCKQGTLTLSRGPCCWDDVLL
PNRIHGVCQSQDCNGRVAEFYLKCAAHPTCDNDTSVALDLIMPNTRSVPCIACTDIMSPV
LVFQCAERHVICLECFYLYCVTRLNERQFIHEPLVGYSLPCAACCPDSLIKEIHHFRVLG
DEQYERYQRYAAEECLLQMGGVLCPAPGCGAGILPVDDDVRRVCCELSNGLGCGFVFCRN
CKEEYHEGSCRQKMATAEGNTLQGYIVDEEAALRARWEQASQETIDKTTHPCPKCKVPVE
KNGGCMHMVCPRSHCRFEWCWLCRVEWNRECMGNHWFG
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atgatcgtatatgtccggtttaattccagtcatgggttcccggtggagttggaacagggt
gcgagtgtagctgacctgaaagaggcagtggggcgtctacagggcgttgaacccggtcac
ctgcgggtgatttttgctggacgagagctctgcagtgaatcaacacttcagggctgtgat
ctccctgaacaaagcacggttcacgtggttctgccgccctccggttcagctcagcgttct
gagctggttttacagcgtagactggacgatggggtggctagcttgaccagactcgacctc
agtccctctcgtctgaccactgcatctgaaggtctggcttttattctggagacagatgcc
tccggtcaaagaaacccctccaggcatgcagaatccagagtccacagcagtttttatgta
ttctgtaaaaccatctgcaaatccatccagcctggaaagctacgagttcgctgcaaagac
tgcaaacagggcaccctcacactcagcagggggccgtgttgctgggatgatgtgcttctc
cctaacaggattcatggagtttgtcagtcacaagactgcaatggcagagtggcggagttc
tacctgaaatgtgctgctcaccccacctgtgataatgacacttcggtagctctggacttg
atcatgcccaacacacgcagcgtcccctgcattgcctgcactgacatcatgagtccagtt
ctggtgtttcagtgtgccgagcgtcacgtgatctgcctggagtgcttctatctgtactgt
gtgaccagactgaacgagcgacagtttatccacgagccgctggtgggctactcactgccc
tgcgcagcttgctgtccggactctctcattaaagagattcatcattttcgagtcctggga
gatgaacagtatgagcgttaccagcgatatgcagcagaggagtgtcttcttcagatggga
ggagttttgtgccccgctcctggatgtggcgctggcatacttcctgtggatgatgatgtc
agaagagtctgctgtgagctaagcaatggactcggctgtgggtttgtgttttgcagaaac
tgtaaggaagaatatcacgagggaagctgcagacagaagatggccacagcagagggaaat
acccttcagggttatattgtagatgaagaagcggcacttcgtgctcggtgggaacaagcc
tcacaggagactatagacaagacaactcacccatgccccaaatgcaaagttcctgtggaa
aaaaatggtggctgtatgcacatggtgtgtccaaggtctcattgtaggttcgagtggtgc
tggctgtgtcgtgtggaatggaacagggagtgtatgggaaaccactggtttggataa
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