KEGG   Paramisgurnus dabryanus (large-scale loach): 135733338
Entry
135733338         CDS       T10799                                 
Symbol
sf3b1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
  KO
K12828  splicing factor 3B subunit 1
Organism
pdab  Paramisgurnus dabryanus (large-scale loach)
Pathway
pdab03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pdab00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    135733338 (sf3b1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pdab03041]
    135733338 (sf3b1)
   03036 Chromosome and associated proteins [BR:pdab03036]
    135733338 (sf3b1)
Spliceosome [BR:pdab03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    135733338 (sf3b1)
 Complex B
    135733338 (sf3b1)
 Complex C
   U2 SnRNP specific factors
    135733338 (sf3b1)
Chromosome and associated proteins [BR:pdab03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    135733338 (sf3b1)
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT_EF3_N HEAT_ECM29 Htt_N-HEAT_1 HEAT_2 XMAP215_CLASP_TOG Adaptin_N HEAT_Maestro GST_N_4 UNC45-central DUF2298
Other DBs
NCBI-GeneID: 135733338
NCBI-ProteinID: XP_065107866
LinkDB
Position
15:14454273..14463416
AA seq 1316 aa
MAKIAKTHEDIEAQILEIQGMKAALVEGADEGVGLDSTGFFDQEIYGGSDSRFAGYVTSI
AANEQEEDDDEDSSTSLLGQKKPGYHAPVAILNSIPQSDEQYDPFAEHRPQKISDREDEY
KKRRQKMIISPERHDPFADGGKTPDPKQQIRTYMDVMKEQHLSKEEREIRLQMVEKAKTG
ELKAVNGSAASQAAAAAKRKRRWDQTADQTPGNTTPKKVSSWDQADSASDTPGHTPGHTP
SNSRWDETPGRAKGSETPGATPSSRMWEPTPSHTPAGAATPGRDTPGHATPGHGGATGSV
RKNRWDETPKTERETPGHGSGWAETPRTDRGDESVGETPTPGASKRKSRWDETPASQMGS
STPILTPGKTPLGTPAMNMATPTPGHLMSMTPEQLQAWRWEREIDERNRPLTDEELDAMF
PEGYKVLPPPAGYVPIRTPARKLAATPTPIGGMTGFHMQVEDRTTKQMNDQPSGNLPFLK
PDDIQYFDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGA
GPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYY
ARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFL
KAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALA
IAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTRE
VMLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRR
NYRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGATDIDHKL
EEQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVR
QQAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHK
MTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKA
HKKAIRRAAVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTV
LPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTA
SAVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQ
YCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPLVYNDEKNSYVRYELDYFL
NT seq 3951 nt   +upstreamnt  +downstreamnt
atggcgaagatcgccaaaacacacgaagacattgaggctcagatcctggaaatccagggg
atgaaagccgcccttgtggagggagcagacgagggtgttgggctcgattccactggattt
tttgaccaggaaatctatggaggcagcgacagccgctttgctggatatgtgacttcaatt
gctgcaaatgaacaggaagaggatgatgacgaggactcgtcaacaagtctccttggacaa
aagaaaccaggatatcatgctccggttgcaatactcaattccattcctcaatcggatgag
cagtacgatccatttgctgaacacagaccacagaagatatcggaccgtgaggatgagtac
aagaaacgcagacaaaagatgatcatctccccagagcgtcatgaccctttcgcagatggg
ggcaaaacgccggaccccaagcagcagatcaggacgtacatggatgtaatgaaggagcag
catctgtccaaagaagagagagaaatcaggctgcagatggtagagaaagcaaaaactggg
gagctgaaagcagtgaacggctctgctgcgtctcaggctgctgcagcagccaaacgcaaa
cgtcgatgggaccagacagctgaccaaacccccggcaacaccacacccaaaaaagtgtcc
agttgggaccaggcagatagcgcttctgatacaccgggacacacaccaggacacacacct
tccaacagccgttgggatgagacacctggtcgtgccaaaggtagtgagaccccaggagcc
acaccaagctcccgtatgtgggaacccacacccagccacaccccagccggagctgccacg
ccgggtcgggacacccctggccatgccactcctggtcatggtggggcgacaggcagtgta
cgcaagaatcgctgggacgagactccaaaaacagagagagagacgcctggtcatggtagt
ggctgggctgagacaccacgcacagacagaggagatgagtcagtaggtgagacgcccacc
ccgggtgcaagcaagaggaagtcaagatgggatgaaacaccagccagtcagatgggctct
tcaacacctatcctcacccctggaaagacacctctgggcacacctgctatgaacatggcc
acgcccactccaggtcacctgatgagcatgactccagaacagttgcaggcttggcgttgg
gagcgagagattgatgagaggaaccgcccactgaccgatgaggaacttgatgcaatgttt
ccagaaggatacaaagtactacccccaccagcagggtatgtgcccatccgcacccctgcc
cgtaaattagctgccacccccacccccattggaggcatgactggtttccacatgcaagta
gaagacagaactacaaaacaaatgaacgaccagccctctggaaacctgcccttccttaaa
ccagatgacatccagtacttcgacaaactgttggttgaagttgatgagtccaccctcagt
ccagaagaacagaaggaacgcaagatcatgaagctcctcctgaagatcaaaaatggaact
cctcccatgagaaaggctgcgcttcgtcaaatcacagataaggccagagagtttggtgcc
gggcccctctttaaccaaatcttgccgctgctgatgtctcctacgctggaggaccaggag
cgacatctcttggtgaaggtcatcgatcgcatcctctacaaacttgatgacttggttcga
ccttacgtccacaagattcttgtggtgattgagcccctcctgattgatgaagattactat
gctagagtagagggtagggagatcatctccaatttggcaaaggctgccggtctggccact
atgatttcaaccatgagacctgatattgacaacatggacgagtacgtgagaaacacgaca
gctcgtgcttttgctgttgtggcatctgctctgggcatcccatctctcctgcctttcctc
aaggctgtgtgtaaaagcaagaaatcctggcaggctcgtcacacaggcatcaagattgta
cagcagatcgctatcctcatgggctgcgctatcctgccccatctccgcagcttggtggag
attatagagcatggtcttgtggatgagcagcagaaagtacgaaccatcagtgctttggct
attgctgccctggctgaagctgccaccccatatggtatcgagtcctttgattctgtactg
aaacctctttggaagggtatcaggcaacacagaggcaagggtcttgctgccttcttgaaa
gctattggatacttgattcctcttatggatgctgaatatgccaattactacaccagagaa
gtgatgcttattcttatccgagagtttcagtctcctgatgaggagatgaaaaagatcgtc
ctcaaggttgtgaaacagtgctgtggcacagatggtgtggaagccaattacattaaaaca
gaaatcttgccaccatttttcaaacatttctggcagcatcgaatggcattggataggcgt
aactacagacagttggtggacactacagtggagctggccaataaggtgggggcagctgag
attatatcgcgtatcgtggacgacttgaaagatgaagctgagcagtacagaaagatggtt
atggagaccattgagaaaatcatgggtaaccttggtgccactgacatcgatcacaaactg
gaggagcagcttattgatggtatcctgtacgctttccaagaacagaccacagaggactct
gtgatgctgaatggctttggtacagtggtaaacgctctgggtaagagagtcaaaccgtac
ttgcctcagatctgcggtacagtgctgtggcgtctcaacaacaaatccgccaaagttcgt
cagcaggccgctgacctgatttcccgcacggcagtagtcatgaaaacatgtcaagaggaa
aagctgatgggacatttgggtgtggtgttatacgagtacctgggagaagaatatccagaa
gtgcttggtagcatcctaggagctcttaaagctattgtgaacgtcattggtatgcacaag
atgacaccacctattaaagatttgcttccccgtttgacacccatcctgaaaaacagacat
gagaaggtgcaggagaactgcattgatctagtgggcagaattgctgacaggggtgcagag
tatgtgtccgccagggaatggatgcgcatctgttttgaattgctggagctgttaaaagcc
cacaagaaggccatccgcagagctgccgtcaacactttcggctatattgccaaggccatt
ggtcctcatgatgtgttagctacactgcttaacaatctaaaggtacaggaacgtcaaaac
agagtttgcacgacggtagccatcgctattgtggccgagacgtgttcacccttcactgtg
cttcctgcattgatgaacgagtaccgcgttcccgagcttaacgtccagaacggtgtcctg
aagtctctgtctttcctgtttgagtacatcggtgaaatgggcaaagattacatttatgcc
gtcacacctctgttagaggatgctttgatggacagagatctggtgcacaggcagacggcc
agtgctgttgtgcaacatatgtcattgggtgtctatggctttggatgtgaggattctctc
aaccatttgctcaactacgtctggcctaatgtctttgaaacatctcctcatgttatccaa
gctgtaatgggggcccttgagggcctgcgagtggcgattggtccttgccggatgctacag
tactgcttgcagggtttgtttcaccctgctcggaaagtacgtgatgtgtactggaagatc
tataactccatctatatcggctcccaggacgcactgatcgcacattaccctcttgtctat
aatgatgagaagaactcttatgttcgttatgagctcgattactttctgtga

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