Paramisgurnus dabryanus (large-scale loach): 135733338
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Entry
135733338 CDS
T10799
Symbol
sf3b1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
pdab Paramisgurnus dabryanus (large-scale loach)
Pathway
pdab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pdab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135733338 (sf3b1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pdab03041
]
135733338 (sf3b1)
03036 Chromosome and associated proteins [BR:
pdab03036
]
135733338 (sf3b1)
Spliceosome [BR:
pdab03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
135733338 (sf3b1)
Complex B
135733338 (sf3b1)
Complex C
U2 SnRNP specific factors
135733338 (sf3b1)
Chromosome and associated proteins [BR:
pdab03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
135733338 (sf3b1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
HEAT_Maestro
GST_N_4
UNC45-central
DUF2298
Motif
Other DBs
NCBI-GeneID:
135733338
NCBI-ProteinID:
XP_065107866
LinkDB
All DBs
Position
15:14454273..14463416
Genome browser
AA seq
1316 aa
AA seq
DB search
MAKIAKTHEDIEAQILEIQGMKAALVEGADEGVGLDSTGFFDQEIYGGSDSRFAGYVTSI
AANEQEEDDDEDSSTSLLGQKKPGYHAPVAILNSIPQSDEQYDPFAEHRPQKISDREDEY
KKRRQKMIISPERHDPFADGGKTPDPKQQIRTYMDVMKEQHLSKEEREIRLQMVEKAKTG
ELKAVNGSAASQAAAAAKRKRRWDQTADQTPGNTTPKKVSSWDQADSASDTPGHTPGHTP
SNSRWDETPGRAKGSETPGATPSSRMWEPTPSHTPAGAATPGRDTPGHATPGHGGATGSV
RKNRWDETPKTERETPGHGSGWAETPRTDRGDESVGETPTPGASKRKSRWDETPASQMGS
STPILTPGKTPLGTPAMNMATPTPGHLMSMTPEQLQAWRWEREIDERNRPLTDEELDAMF
PEGYKVLPPPAGYVPIRTPARKLAATPTPIGGMTGFHMQVEDRTTKQMNDQPSGNLPFLK
PDDIQYFDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGA
GPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYY
ARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFL
KAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALA
IAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTRE
VMLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRR
NYRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGATDIDHKL
EEQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVR
QQAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHK
MTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKA
HKKAIRRAAVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTV
LPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTA
SAVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQ
YCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPLVYNDEKNSYVRYELDYFL
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaaaacacacgaagacattgaggctcagatcctggaaatccagggg
atgaaagccgcccttgtggagggagcagacgagggtgttgggctcgattccactggattt
tttgaccaggaaatctatggaggcagcgacagccgctttgctggatatgtgacttcaatt
gctgcaaatgaacaggaagaggatgatgacgaggactcgtcaacaagtctccttggacaa
aagaaaccaggatatcatgctccggttgcaatactcaattccattcctcaatcggatgag
cagtacgatccatttgctgaacacagaccacagaagatatcggaccgtgaggatgagtac
aagaaacgcagacaaaagatgatcatctccccagagcgtcatgaccctttcgcagatggg
ggcaaaacgccggaccccaagcagcagatcaggacgtacatggatgtaatgaaggagcag
catctgtccaaagaagagagagaaatcaggctgcagatggtagagaaagcaaaaactggg
gagctgaaagcagtgaacggctctgctgcgtctcaggctgctgcagcagccaaacgcaaa
cgtcgatgggaccagacagctgaccaaacccccggcaacaccacacccaaaaaagtgtcc
agttgggaccaggcagatagcgcttctgatacaccgggacacacaccaggacacacacct
tccaacagccgttgggatgagacacctggtcgtgccaaaggtagtgagaccccaggagcc
acaccaagctcccgtatgtgggaacccacacccagccacaccccagccggagctgccacg
ccgggtcgggacacccctggccatgccactcctggtcatggtggggcgacaggcagtgta
cgcaagaatcgctgggacgagactccaaaaacagagagagagacgcctggtcatggtagt
ggctgggctgagacaccacgcacagacagaggagatgagtcagtaggtgagacgcccacc
ccgggtgcaagcaagaggaagtcaagatgggatgaaacaccagccagtcagatgggctct
tcaacacctatcctcacccctggaaagacacctctgggcacacctgctatgaacatggcc
acgcccactccaggtcacctgatgagcatgactccagaacagttgcaggcttggcgttgg
gagcgagagattgatgagaggaaccgcccactgaccgatgaggaacttgatgcaatgttt
ccagaaggatacaaagtactacccccaccagcagggtatgtgcccatccgcacccctgcc
cgtaaattagctgccacccccacccccattggaggcatgactggtttccacatgcaagta
gaagacagaactacaaaacaaatgaacgaccagccctctggaaacctgcccttccttaaa
ccagatgacatccagtacttcgacaaactgttggttgaagttgatgagtccaccctcagt
ccagaagaacagaaggaacgcaagatcatgaagctcctcctgaagatcaaaaatggaact
cctcccatgagaaaggctgcgcttcgtcaaatcacagataaggccagagagtttggtgcc
gggcccctctttaaccaaatcttgccgctgctgatgtctcctacgctggaggaccaggag
cgacatctcttggtgaaggtcatcgatcgcatcctctacaaacttgatgacttggttcga
ccttacgtccacaagattcttgtggtgattgagcccctcctgattgatgaagattactat
gctagagtagagggtagggagatcatctccaatttggcaaaggctgccggtctggccact
atgatttcaaccatgagacctgatattgacaacatggacgagtacgtgagaaacacgaca
gctcgtgcttttgctgttgtggcatctgctctgggcatcccatctctcctgcctttcctc
aaggctgtgtgtaaaagcaagaaatcctggcaggctcgtcacacaggcatcaagattgta
cagcagatcgctatcctcatgggctgcgctatcctgccccatctccgcagcttggtggag
attatagagcatggtcttgtggatgagcagcagaaagtacgaaccatcagtgctttggct
attgctgccctggctgaagctgccaccccatatggtatcgagtcctttgattctgtactg
aaacctctttggaagggtatcaggcaacacagaggcaagggtcttgctgccttcttgaaa
gctattggatacttgattcctcttatggatgctgaatatgccaattactacaccagagaa
gtgatgcttattcttatccgagagtttcagtctcctgatgaggagatgaaaaagatcgtc
ctcaaggttgtgaaacagtgctgtggcacagatggtgtggaagccaattacattaaaaca
gaaatcttgccaccatttttcaaacatttctggcagcatcgaatggcattggataggcgt
aactacagacagttggtggacactacagtggagctggccaataaggtgggggcagctgag
attatatcgcgtatcgtggacgacttgaaagatgaagctgagcagtacagaaagatggtt
atggagaccattgagaaaatcatgggtaaccttggtgccactgacatcgatcacaaactg
gaggagcagcttattgatggtatcctgtacgctttccaagaacagaccacagaggactct
gtgatgctgaatggctttggtacagtggtaaacgctctgggtaagagagtcaaaccgtac
ttgcctcagatctgcggtacagtgctgtggcgtctcaacaacaaatccgccaaagttcgt
cagcaggccgctgacctgatttcccgcacggcagtagtcatgaaaacatgtcaagaggaa
aagctgatgggacatttgggtgtggtgttatacgagtacctgggagaagaatatccagaa
gtgcttggtagcatcctaggagctcttaaagctattgtgaacgtcattggtatgcacaag
atgacaccacctattaaagatttgcttccccgtttgacacccatcctgaaaaacagacat
gagaaggtgcaggagaactgcattgatctagtgggcagaattgctgacaggggtgcagag
tatgtgtccgccagggaatggatgcgcatctgttttgaattgctggagctgttaaaagcc
cacaagaaggccatccgcagagctgccgtcaacactttcggctatattgccaaggccatt
ggtcctcatgatgtgttagctacactgcttaacaatctaaaggtacaggaacgtcaaaac
agagtttgcacgacggtagccatcgctattgtggccgagacgtgttcacccttcactgtg
cttcctgcattgatgaacgagtaccgcgttcccgagcttaacgtccagaacggtgtcctg
aagtctctgtctttcctgtttgagtacatcggtgaaatgggcaaagattacatttatgcc
gtcacacctctgttagaggatgctttgatggacagagatctggtgcacaggcagacggcc
agtgctgttgtgcaacatatgtcattgggtgtctatggctttggatgtgaggattctctc
aaccatttgctcaactacgtctggcctaatgtctttgaaacatctcctcatgttatccaa
gctgtaatgggggcccttgagggcctgcgagtggcgattggtccttgccggatgctacag
tactgcttgcagggtttgtttcaccctgctcggaaagtacgtgatgtgtactggaagatc
tataactccatctatatcggctcccaggacgcactgatcgcacattaccctcttgtctat
aatgatgagaagaactcttatgttcgttatgagctcgattactttctgtga
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