Paramisgurnus dabryanus (large-scale loach): 135733499
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Entry
135733499 CDS
T10799
Symbol
col18a1a
Name
(RefSeq) collagen type XVIII alpha 1 chain a isoform X1
KO
K06823
collagen type XVIII alpha
Organism
pdab Paramisgurnus dabryanus (large-scale loach)
Brite
KEGG Orthology (KO) [BR:
pdab00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pdab04147
]
135733499 (col18a1a)
00535 Proteoglycans [BR:
pdab00535
]
135733499 (col18a1a)
00536 Glycosaminoglycan binding proteins [BR:
pdab00536
]
135733499 (col18a1a)
Exosome [BR:
pdab04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
135733499 (col18a1a)
Proteoglycans [BR:
pdab00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
135733499 (col18a1a)
Glycosaminoglycan binding proteins [BR:
pdab00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
135733499 (col18a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Fz
DUF1554
Motif
Other DBs
NCBI-GeneID:
135733499
NCBI-ProteinID:
XP_065108237
LinkDB
All DBs
Position
15:complement(8149220..8248707)
Genome browser
AA seq
1813 aa
AA seq
DB search
MMPGFRMWLCLIVLACMRIQHSHGWFWYGSEGKGTQTPVNLTTINTTSPSRTEAPPSTAG
TSASVTEVPKVAEILGMYVRYGDGFEGSASGLFKSESLSRSELASGSGSSQFESQESYVT
PTDLSGISVESANVQMESKVDRMDGHNSSFVGSQFNQSIVSLKNISSNLLGDNSSKHDSY
NTTQYSLEYSVSDNVLTNESDRSVITPRCLEVHSKLPFCTRTGAKSFAVPNFLNQSSVEE
VKVVLSEWALLLRSRCHHSLEWFFCLLLMPRCGPPGLPAPMPCRSFCEVLRDSCWTLLDE
GRLPVECHSLPEETHDGYQCLSVSNQKEQNGISLLQLIGDPPPDGITEDYGPDNSLRYMF
GPSSNVGQSAAAHLPNPFYRDFSLIFNIKPTSPKPGVIFSITDPSQDFMYVGVKLSEVQN
DKQDIIFYYTEPDSESSYEAARFPVPSMLNTWTRFSISILNEKASLYFKCDSDPQVVNFE
RSPDDMDLDAGAGVFVGHASRADPDKFLGVIGDLRVLKDPGAAQRHCEEDEDDYDVASGD
GPSGYGETETTSVQVTPPSSRPIQQPPVTSVIQQTGSVELSRRISGSHGDSRKTSGSYGD
SRQTGLHGGSRKTSGSYGDSRQAGSHGDSRQTSGSYGDSRQTVSHSGSRKKSGSYGDSRQ
TVSHGGSRQTGSDSDSRQTSGSYTDSRQTGSHSDSRQTSGDSGKTHTLVDISKQILVSHD
VSRQASSTVDHSLRASGSADDGLRYSVESRIGPAGTAGSVGAKGDKGDRGEKGAKGDRGL
VGPKGDSGSASVSGGGSKGEKGELGEKGMKGNPGFGYPGSKGDRGPPGPQGPPGPPGPSA
ELEVRGDGSVVERVTGPRGPPGPPGPPGPTGTDGEPGDPGEDGKTGPAGPTGFPGTPGNT
GPKGEKGDRGDGNPGPRGPPGPPGPPGPPTRSDRPTFVDMEGSGFDAEVMRGPPGLQGPP
GPPGIPGPPGPESAASGGFGPPGPPGQNGAPGQPGLPGTPGADGKSGLPGPKGERGDAGD
LGLPGPLGEKGAPGVPGTPGLPGEGGLAGLPGPMGPVGPPGPPGPPGPSYRVGFDDMEGS
AFEFGSISGVRGPTGVRGPPGVPGLPGKPGLPGLPGEKGSEGPQGIDGRPGLDGFPGPQG
PQGPKGDQGHRGEPGRDGNGLPGPPGPPGPPGQIVYRNSEHYDATEETGPQGGSGRPGQA
GFPGPMGPKGDRGEPGAPGYGIKGEKGEPGYVLGPDGNPLYPGGLGGIGERGIPGPVGPP
GPSGPPGPKGEFGMPGRPGRPGVNGYKGEKGDPGSGSGYGYPGQPGPPGPPGPPGPAAPL
DRFGYEDFVRQYSATKGEKGEQGHPGVPGTPGFAPDIDIYTLKNEMKGERGEPGPRGEKG
EPGGGFYDPRFGAIAGPPGIPGLPGPKGDSITGPPGPQGPPGPPGVGYDGRQGNPGPPGP
PGPPGSPSLPGPYRPSLSIPGPPGPPGPPGIPGHGTGVTVLRSYDIMLATARRQTEGALI
YIMDRSDLYLRVQNGVRQVMLGDYKPFYVDLDNEVAAVEPPPVVPYSQDHTANNGAEQIS
PPHQPVDLPRENPSPPETFYPEPQYPPLPDSRYPPNTDSRYDSGQSPIRYPERYPVTPRR
PIPPVNQPEGHTHTSGPGLHLIALNSPQVGNMRGIRGADFMCFQQARAVGLKGTFRAFLS
SKLQDLYSIVRRSDRDTLPIVNLKDQVLFRSWESLFSDSESRMKDGASIYSFDGRDVLRD
SAWPEKMIWHGSNGKGHRQTDNYCETWRTGDRAVTGLSSSLQTGQLLHQTPSSCSSSYIV
LCIENSYMSQFKK
NT seq
5442 nt
NT seq
+upstream
nt +downstream
nt
atgatgcctgggttcaggatgtggctgtgccttattgtactggcgtgcatgaggattcag
cactcgcatggatggttctggtatggttctgaagggaagggcacacagacgccagtcaac
ctgactactataaacaccacatcaccatcaaggacagaagcaccacctagtacggcaggt
acaagtgcttctgtgaccgaggtccctaaagtggccgagatattaggtatgtatgtgaga
tatggagatgggtttgaggggtctgctagtggattatttaagtctgaatctttaagtagg
tctgaacttgcttctggatccggatcttctcagtttgaaagccaggagagctatgttaca
ccaactgacttgtcgggcatttcagttgagagtgctaatgtgcaaatggagagcaaagtg
gatcggatggatggacataacagcagctttgtagggagccaatttaaccaaagcattgtt
tctttaaaaaatatcagcagtaatttacttggggataattcttctaagcatgatagttat
aacacaacacagtattcccttgaatactctgtctcagataatgtactaaccaatgaaagt
gaccgatctgtaataaccccacgctgcttggaagttcattccaaattgccattttgcacc
agaacaggagcgaagagtttcgcagtgcctaattttctaaatcaaagcagcgtggaggaa
gttaaggtggttttaagcgaatgggcgttgctcttacggtcacgctgccaccatagcttg
gaatggtttttctgcttgctgttgatgccgcgatgcggcccacctggactgccggcccca
atgccctgtcgcagtttttgcgaggtcttgcgtgacagctgctggacgctgctggatgag
ggccgcctccccgtggagtgccattctctgcctgaagagacccatgatgggtatcagtgc
ttgtcagttagtaaccagaaagaacagaacggtatatcactgttgcagttaatcggtgat
cctccaccagatggcatcactgaagactatggccccgataacagccttcgctacatgttc
gggccgagctccaacgtgggccaatcagctgcggcccacctccccaacccgttctaccgc
gacttctcgctgatcttcaacataaaacctacatccccaaagcctggggtcatcttctcc
atcaccgacccctcccaggacttcatgtatgtcggtgtaaagttatcagaggttcagaac
gacaagcaggacatcatcttttactacaccgagccggactcggaaagctcatacgaggcg
gccaggttccccgtgccatccatgctgaacacctggacgaggttttccatcagcattctc
aatgaaaaggcatcgctgtacttcaagtgtgactcggacccacaagtggtcaacttcgag
cggtccccagacgacatggacctggatgctggggccggagtgtttgttggtcatgccagt
agagcagatcctgataagtttctgggtgtaatcggggatctcagggtgttgaaagacccc
ggggcggctcagcgtcactgcgaggaagatgaggatgactatgatgtggcatcaggtgat
ggaccaagtggctatggggagaccgaaacaacatcagtccaggttacaccgccatcctct
cgaccaatccagcagccaccggtgacctctgtaatacagcagacaggctctgttgaatta
tctcgccgaatttctggttcacatggtgattctcgaaaaacgtctggatcatatggtgat
tctcgacaaactggtttacacggtggttctcgaaaaacatctggttcatacggtgattct
cggcaagctggttcacatggtgattctcgtcaaacatctggttcatacggtgattctcga
caaactgtttcacacagtggttctcgaaaaaagtctggttcatacggtgattctcgacaa
actgtttcacatggtggatctcgacaaactggctcagacagtgattctcgacaaacatct
ggttcatacactgattcccgacaaactggctcacacagtgattctcgacaaacatctggt
gattctggaaaaacccacaccttagttgatattagcaagcaaattttagtgtcacatgat
gtttctagacaagcttcaagcacagttgaccactctctgagagcttcaggctcagctgat
gatggcctgcggtattctgtggagtccagaatcggtcctgcaggtacagcaggatctgtt
ggtgcaaaaggagataaaggtgacagaggagagaagggggccaaaggtgaccggggcctt
gtgggaccaaagggtgattcgggatctgcctctgtgtctggtggaggatcaaaaggagag
aagggcgaattaggagaaaaaggaatgaagggcaaccctggttttggttatcctggatca
aagggagaccgtggcccccctggaccccaagggccacctggtccaccagggcccagtgca
gagttagaggtgagaggtgatggatcagtagtggagagggtgacgggaccaagaggacca
cctgggccaccaggacccccgggacctactggaactgatggggaaccaggtgaccctggt
gaagatgggaagacgggccctgctggacctactggttttccaggaactccggggaataca
ggacctaaaggagagaaaggtgaccgaggtgatggtaatccaggaccccgtgggcctcca
gggcctcctggccctccaggacccccaactcgctctgacagacccacatttgtggacatg
gagggttctggttttgatgcggaggttatgcggggaccgccaggtttgcaaggtcctcct
ggtcctcccggcatccccggaccccctggccccgaatctgcagcgtctggtggtttcggg
cctcctggtccacccggtcaaaatggtgctccaggtcaaccgggacttccaggtactcca
ggtgcggatggaaaatcaggtttacctggaccaaaaggagaaaggggtgacgccggtgat
ctgggcttacctggacctctgggagagaagggtgccccaggtgttcctggtacccctggt
cttccaggagagggtggacttgctgggcttccaggaccaatgggacccgttggaccaccg
ggaccacctggtccccctggcccaagttatcgtgttggttttgatgacatggaaggctct
gcttttgaatttggttcaatttctggcgtaagaggacctacaggagtgcggggacctcct
ggtgtgccaggactaccaggtaagcctggtcttccaggacttcctggtgagaaaggcagc
gaaggacctcagggaattgatggacggcctgggttggatggctttcctggaccacaggga
ccacaggggcccaaaggagaccaaggccacagaggtgaacctggtcgagatgggaatggt
cttcctggtccacctggtcctccaggaccacctggccagattgtttatcggaatagtgaa
cattatgatgcaactgaagaaacagggcctcagggagggtctggtcgtccaggtcaagca
ggtttccctggcccaatgggaccgaaaggtgacagaggtgaacctggagcaccaggttat
ggcattaagggagagaaaggagaacctggatatgttctcggacctgatggaaacccactt
taccctggtggattgggaggcattggcgagagaggaattcctggaccggttggacctcct
ggaccatctggacctccaggtccgaagggtgaatttggaatgccaggcagacccggccgt
ccaggtgtgaatggttataaaggtgaaaaaggagatccaggttcaggttctggatatggc
tatccgggtcaacctggtcctccaggtcctcccggtccccctggacctgctgcgcctttg
gatagattcggatatgaagattttgtgagacagtattcagctacgaaaggagagaaagga
gaacagggacatcctggcgtacctgggaccccaggttttgcacctgatattgacatctat
actcttaagaatgagatgaaaggagaacgtggtgagcctggtccaagaggagagaaagga
gaaccaggcggtggattttatgaccctcggtttggagctatagcagggccaccaggaatc
cctggacttcctggacctaaaggagactctatcacaggcccacctggacctcagggccca
cctggaccacctggggttggttatgatgggcgtcaaggaaacccaggacctccaggaccc
cctggtcctccagggtcgccatcattgccagggccctacagaccatcactcagtattccc
ggacccccaggtccgcccggccctcctggaatccccggacatggaactggggtgactgtg
ctcaggtcttatgacataatgctcgcgacagcacgcagacaaacagaaggagccctcata
tatattatggacagaagtgacctttacctcagagttcaaaatggagtcagacaagtgatg
cttggagattataaacccttctatgtagatctggataatgaggtggcagcagtcgagcca
ccccccgttgtcccgtactcccaggaccacacagcgaacaacggagcagagcagatttct
ccaccacaccagcctgttgatttgccgagggaaaacccgagtccacctgaaaccttctac
ccagaaccacaatatccccctctgcccgactctagatacccacccaacaccgacagcagg
tacgattccggccaatcacctatcaggtaccctgaaagatacccagtgactcctcgccgt
cccatcccccccgtcaatcaaccggaaggccacacgcacacatctggacctgggttgcat
cttattgccctaaactctccacaagtgggcaacatgagaggcattcgtggggcggatttc
atgtgcttccagcaggctcgggccgtggggctgaaaggaacattcagagcattcctttcc
tccaaactccaagatctctacagcatcgtccgcagatccgaccgagacacgctaccaatt
gttaatcttaaggatcaagtgctgttcagaagctgggagtctctcttcagtgattcagag
agcagaatgaaggacggtgcttccatttactcatttgatggtagagatgtcctgagggac
agtgcctggccagagaagatgatctggcacgggtctaatggcaagggtcaccggcagacg
gataactactgcgagacatggaggactggagaccgagcggtgacaggcttgtcctcatct
ctgcagacgggtcaactccttcatcagacacccagcagctgttccagttcctacatcgtc
ctctgcatcgagaacagctacatgtcgcagttcaagaaataa
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integrated database retrieval system
