Paramisgurnus dabryanus (large-scale loach): 135733943
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Entry
135733943 CDS
T10799
Symbol
casc3
Name
(RefSeq) protein CASC3 isoform X1
KO
K14323
protein CASC3
Organism
pdab Paramisgurnus dabryanus (large-scale loach)
Pathway
pdab03013
Nucleocytoplasmic transport
pdab03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pdab00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
135733943 (casc3)
03015 mRNA surveillance pathway
135733943 (casc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdab03019
]
135733943 (casc3)
Messenger RNA biogenesis [BR:
pdab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
135733943 (casc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
135733943
NCBI-ProteinID:
XP_065108843
LinkDB
All DBs
Position
3:20214467..20226218
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AA seq
769 aa
AA seq
DB search
MADRRRRRRRASQDSEEEDESASGSEGGRPSSPGGKARGRDPEPVETPAERVVAKSDDES
ECESEDGVGEAVLSDYDSADLEENESHTEGGEEEEEGEHFSTEEASRPAAEPKPAVDAPV
EELEAEESDGGMKEGKADEKENLAGERQSGDGQAETKLETGPKCLQESTEDPENKSDSKG
SQKLDDDEDRKNPAYIPRKGLFFEHDVRGQTQEEERPKGRHRKLWKDEGRWEHDKFHEDE
QAPKSREELISLYGYDIRNGTGPSEGRSYRSRKPRHGSPNREPRRQRDGERSVRTTWQGP
PPGHRNAPRPVPLQSGSSTAPPAASRTTGRTSTQPPLRSFHSNRAPSAPHRTEGRGYPKP
GLDGPPGRGVRTHPGEGERGPRLKGRGSYSTYADRSQDLLVEDIQSEEDEEGEIPLATTT
YTAHHYKTERDRVPSPRKQEPGAVAEGSSAAGQMRESSPPQERQVEKKSYSLARRATRTR
PSDLSKQASLDDSSSTVQQAATSAKGESWQEQSDTGTQGGLTGLDQDLARLSLTGQNWAQ
SPPSYLQAEMRGIRGSMHMGGGPPQYGNMEEMGVGGGRAKRYSSQRQRPVPEPAPMHIGV
MEGHYYEPMSFQGPIYAHGDNPAALPPQGMLVQPEIHMPHPTHPGHPALHPHQSGGPMPN
PALYAAPPVSMSPGQPPPQQLLPPPFYPPPGVMTFGNTNYPYPAGATLPPMYPNPQAQSQ
VFGGVTYYDTVHQQAQPKRSPPRRSSHPVTVRPPPPEDQSRNPAEEIRS
NT seq
2310 nt
NT seq
+upstream
nt +downstream
nt
atggcggaccggcggcgacggagacggcgcgcctctcaggatagcgaggaggaggacgag
tctgcctcgggctccgagggcggcagaccctcatcgcccggcgggaaggctcgcggaaga
gatcccgagccggttgaaacgccagcggaacgcgtcgtggccaaaagcgacgatgagtcg
gagtgtgaaagtgaagatggcgtaggtgaagctgtgttatcagactatgacagcgccgat
ctggaggagaatgaatcgcataccgagggaggtgaggaagaggaggagggtgagcatttt
agcacagaagaggcttcacggcctgctgcagaacccaaacctgctgtggacgcccctgtg
gaggagctggaggccgaagaaagcgatggagggatgaaggaaggtaaagcggacgagaag
gaaaatctagccggagagaggcagagtggtgatggacaggccgaaactaagcttgagacc
ggccctaaatgtttacaggaaagcacagaggaccctgagaataaatcggacagtaaaggc
agccagaagctggacgatgatgaagacaggaagaatccagcatacatccctcgaaaaggg
ctcttttttgagcatgatgtcagaggtcagactcaagaagaagagaggcctaaaggcagg
cacaggaagttgtggaaggacgaaggtcgttgggaacatgacaagtttcatgaagatgag
caggcaccaaaatcccgcgaagagcttatttctctttacggttatgacatacgcaatggc
acgggaccaagtgaaggacgatcgtaccgttctcgaaaacccagacatggttcgcccaat
cgagagcctaggcgccaacgtgacggcgaaaggtctgttcgtaccacgtggcagggcccc
cctcctggccatcgcaatgcccctcggcctgttcccctacagtcagggtcatccactgct
ccccccgcggcttccagaaccactggacgaacctcaactcagccccctctgcgtagtttc
cacagcaatcgagccccatcggccccgcacaggacagaaggtcgaggatacccgaaaccg
ggtctggacggcccgccgggtcggggtgtgcggactcatcctggggagggtgagaggggc
ccgaggcttaagggccggggcagttactccacctatgctgatcgtagccaggatctgctg
gtggaagacattcaaagtgaggaagatgaggagggtgaaattccactggcaacaactaca
tacaccgctcatcactacaagactgaaagagatagggtcccatcgccacggaaacaggag
ccaggagcggtggcggaaggaagcagtgcggcaggacaaatgcgagaatcgtctcctcct
caagagagacaagtggagaaaaaatcgtactcgcttgcacggagggcgacacgaactcgg
ccgtctgacctcagcaagcaggcgtccttggatgattcttcatcgacggtgcagcaagcg
gcaacatcggcgaagggcgagtcgtggcaggagcagagcgacacgggaacgcaaggtgga
ctgacagggcttgaccaagacctggcccgtcttagcctgacgggacagaactgggcccag
agcccaccctcctacctacaggctgagatgaggggaatccgtggttcaatgcacatgggt
ggaggccctccacaatatggaaacatggaggaaatgggtgtcggtggtggccgggcaaag
cggtattcatcacagcgtcagaggccggttcccgaacctgcgcccatgcacataggagtc
atggagggtcattattatgaacccatgtctttccagggaccaatctacgcacatggggac
aacccagcagccctcccccctcaaggcatgcttgttcagcccgagatccacatgccgcac
cccactcaccctggacacccagccttacatccgcaccaatcaggaggacccatgcccaat
ccggctctttatgctgctccacccgtatctatgtcacccgggcaaccgcctccacagcag
cttctacccccacccttctatccccctccaggtgtcatgaccttcgggaacaccaactac
ccatatcccgctggagcaacactacctccaatgtaccccaacccccaggcacagtcgcag
gtctttggtggggtgacgtactatgacacggttcatcagcaagctcagcccaaacgctcc
ccaccccggcggtcttctcatcctgttactgtcagacctccacctcctgaggaccagagc
agaaatccagctgaggagattcgctcctag
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