Paramisgurnus dabryanus (large-scale loach): 135735741
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Entry
135735741 CDS
T10799
Symbol
palb2
Name
(RefSeq) uncharacterized protein palb2
KO
K10897
partner and localizer of BRCA2
Organism
pdab Paramisgurnus dabryanus (large-scale loach)
Pathway
pdab03440
Homologous recombination
pdab03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pdab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
135735741 (palb2)
03460 Fanconi anemia pathway
135735741 (palb2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pdab03400
]
135735741 (palb2)
DNA repair and recombination proteins [BR:
pdab03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
135735741 (palb2)
FA (Fanconi anemia) pathway
Downstream FA components
135735741 (palb2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PALB2_WD40
Beta-prop_WDR36-Utp21_1st
DUF7385
Motif
Other DBs
NCBI-GeneID:
135735741
NCBI-ProteinID:
XP_065110330
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All DBs
Position
4:33401714..33410408
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AA seq
1283 aa
AA seq
DB search
MEEDIHPNDDQEALRRRLELLKQEYERTAVRLQRAERRDAIRRQSNVSHEINETSACFTS
SHLAASELSDNQKTQHLQTALQFQLAEIALAPHLSSPACMRSPAHRLRSKRSRLRLQNKE
RESDTDNSQEKESLKQGINGSAEEKSEMRKERNMGILPAKVEKNQDNDTIAEEPQELKVV
NCENKPLVLGKKKHLPFQSQINICQERLPPLSHSVEMLQSKTAASKDFSQTSSSLPSCES
VHNLTVKSEANLAEINAYKGNNDSTDNKNSLIMSGALDSCTLVEGLPFPVEYYIRTTRRM
AASHSPVNLEAVIHSQLTRGRGRRRLGQSQARGRGHTTSELSESVCRSNDQAGRRGNGQR
RRRGRRRATTVRTKDAQDCIMSNPVSDSQASIEPLTISTPQTESSCQSEMEGRPQTECEP
IPSSGSAINLTPSKERVTQDFKHLPDSQLYFESKLLPDSNFYPIFRRGHGQTGNHLSSSQ
TSISKNDQSPLLPSLASLIQALQDQDTKNDVQDFHLPDEDFGQLKLERLQLSTSLVEPYV
QRIYNTRRSNRCQTMRGKKSNCDVLCGEHFATEVPTTSALEDSLPLCQSDPIDQSQTEKQ
NTNQSDKHPVNKPSVISYDLTESVKEQTLTIAKTDKTEQKAVILTEKHTASIDQMQTETE
TKNVNMLDINSQDESHMRTDTLSENHSLCPALLDLSPSLTSHTQRGQDPPLPTLGMTPYF
VSPGSPTEPQTHLLSPANCFRSPSSKITTGSVSPDSILSKQFGNVKADTFKKSLGSTEVE
DTGEKNPTNASQEIMMETQTDAEPTQNNTVTGHENFITPETELQVLCISENEEKHECSFD
TDCKHKINCTPEIEAQLNPDIQNNLETKGETYELRAESQRYMDMNRSRCGDESGCAGQTS
NEASTNQKTEEKTVCITNVDEAMENGTDLSNTKTLLNENPLSSTTFPDGGHCSSMLQEMH
TFKALDGGCVLDLCLVRWSTEDWCICVAGEWSVCLWNYKKGVQPWGLLHTWTFAQSVMSL
QAIPDSSGLVCVTLGHLEITEARLLACPSMDGPFTQTLVCKDALQAVVGVSDCRLVCCSA
SGDQQKVTVITFNKEGRVVSTLSMGSVKQNIRTLAAVEGEKDALIGWTECKTLLIWNMKS
GHLLQTILLENTLTMTNCMKGYSYRGVLCILLQNTGNVCDERSETTLFAVIATNPLTGKH
ITLTSFSNPSQHIQQLIDGDVLGSELVGVFQSGHVAVWNLKSRVAKVVGVLDELCRLARW
AGPDTLLTGYLNGDVSVFQYKTL
NT seq
3852 nt
NT seq
+upstream
nt +downstream
nt
atggaggaagatattcaccctaacgacgaccaagaggcattgaggagaagactggagcta
ctgaagcaggagtatgagaggacagcagtgagattacagagagcagaacgccgggatgct
attcgcaggcagagcaacgtctctcacgagatcaatgaaacatcagcgtgttttacatct
tcccatttggcagcttctgaactttctgacaaccaaaagactcagcacttacaaaccgcc
ctccagtttcaacttgctgagattgctcttgctcctcatttgtcatctcctgcatgcatg
cgaagccccgcccaccgtctgcgttctaagcgcagccggctgcgcctgcagaacaaagag
cgagagtcggatactgacaacagccaagagaaagaaagtctcaaacaaggaattaatgga
agcgccgaagaaaagagtgaaatgagaaaagaaagaaatatgggaatattgccagccaag
gtggagaaaaaccaggacaacgatacaattgctgaagaaccacaggagctaaaggttgtg
aactgtgaaaacaagccactggttttaggtaaaaagaaacatttaccctttcagagtcag
attaatatatgccaggaacgtctgcctcctttaagtcattcggtagagatgttacagtca
aaaacagctgcatctaaggacttctcacaaacgtcttcttctctcccgtcatgtgagtca
gtccataatttaacagttaaatcagaagcgaaccttgcagaaataaatgcatataaaggg
aataatgacagcacagataataaaaactctttaattatgtctggagctctggactcttgt
acgctggttgaaggcttaccatttcccgtggagtattatatccgaacaacacgtcgtatg
gctgcatctcacagtcctgtcaacctagaggctgttattcacagccagctcactcggggg
cggggaagacgcaggctcggccaatcacaagcgcgtggtagaggtcacacgacctcagaa
ctttcagaatcggtatgcaggtccaatgaccaggccggacgtagaggaaatggtcagagg
aggaggagagggcgccgtagagcaactacagttaggaccaaagatgctcaagattgtata
atgtcaaatcctgtaagtgattcgcaagcatctatagaaccccttacaatatccacacct
cagactgaatcttcctgtcaatcagaaatggagggaaggccacaaacggagtgtgagcca
atcccgtcgtccgggtctgctattaatttgacgcccagtaaagaacgagttacccaagat
tttaagcacctaccagattctcagctttacttcgagtccaaactcctcccggattctaac
ttttatcctattttcagaaggggacatgggcaaactggaaatcacttatcttcgtcccag
acaagtataagtaaaaatgatcaatcacctcttttgccatcattagcttcacttattcaa
gctcttcaagaccaagacacgaaaaatgacgtccaggatttccacctaccagatgaggat
tttggccagctgaagttggagagactgcagttgtccacgtcacttgtggaaccttacgtc
cagcgtatatacaacacacgccggagcaacaggtgccagacaatgagaggaaaaaagagt
aactgtgatgttctctgcggagaacattttgctacagaagtcccaactacctctgccctc
gaagacagtttgcctctttgtcagtcagaccccattgaccaatcacagactgagaaacaa
aacactaaccaatcagacaagcaccctgtaaacaaaccaagcgtcatttcctacgatctg
acagaaagtgtaaaggaacaaactctgacaatagccaaaacagataagactgaacagaaa
gcagttattttaacagagaaacacactgccagcatcgatcaaatgcaaacagagacggaa
accaaaaatgttaatatgcttgacataaactctcaggatgaatcacatatgcgaacagat
accctctcggaaaaccactctttgtgcccagctttactagatctgagtccatcattgacc
tcacacactcagaggggtcaagaccctcccctaccaactttaggaatgactccatatttt
gtaagcccaggttcacccacagagcctcaaacacatctcctttctcctgctaattgcttt
aggtctccctcttcaaagataactacaggttctgtgtctccagattcgatcttatctaaa
caatttgggaatgtcaaggcagatacctttaagaaaagtttaggttcaaccgaagtagaa
gatactggggaaaagaatccaactaatgccagtcaagaaattatgatggaaactcaaact
gatgcagaaccaacgcaaaacaacactgtaacgggacatgagaactttatcacaccagaa
accgaattgcaagttttatgcatttcggaaaatgaagaaaaacatgaatgcagttttgat
acagattgtaaacataaaataaattgcactcctgaaattgaagctcaacttaaccctgat
atccagaacaatcttgaaactaaaggtgaaacctatgagcttagggctgaatcccaacgt
tatatggatatgaatcggtctcggtgtggagatgaatctggttgtgccggtcaaacttcc
aatgaggcctccaccaatcagaaaactgaagaaaagacagtttgcatcactaatgtggat
gaagcaatggaaaacggcactgatttatccaatactaaaacactattaaatgaaaatccc
ttatcttccacaacctttcctgatggaggccattgttcatccatgctgcaggagatgcac
acttttaaggccctggatggtggatgtgtgttggatttgtgtttggtgcgatggtcgacg
gaggactggtgcatatgtgtggcgggagaatggagcgtttgcctttggaattacaagaag
ggagttcaaccgtggggtcttttacacacatggacatttgcacagtctgtcatgtccttg
caagcgattcctgattcttcaggtttggtttgtgtgactctgggtcacttggaaatcaca
gaagcaagacttcttgcctgtccaagtatggacggaccgttcacacagactttagtatgc
aaagatgctttacaagcagttgtgggcgtgtctgactgtcgacttgtgtgttgctccgcc
tctggagatcagcagaaagtcactgtgataacgttcaataaggaaggaagggtggtgagc
actctttccatgggctcagtaaagcagaacattcggacactggcagccgtagaaggggag
aaagatgctctgattggttggacggaatgtaaaacccttcttatatggaatatgaagtca
ggccatttgcttcagactattctcctggaaaacactttaacaatgacaaactgcatgaag
ggatattcttacagaggagtgctttgtatattacttcagaatactgggaatgtgtgtgat
gaaagaagtgaaacaaccctttttgctgtaattgctacaaatcccctgactggcaaacac
atcacattgacgtctttcagcaacccctctcaacacatacaacagttgatagatggtgat
gtcttgggctctgagcttgttggtgttttccagtctggtcatgttgctgtttggaatctc
aaaagcagggtggctaaagttgttggtgtgctagatgagttgtgtcgactagcgcggtgg
gcagggcctgacacactactgactgggtatctgaacggggatgttagcgtgtttcagtac
aaaactttgtaa
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