Paramisgurnus dabryanus (large-scale loach): 135735909
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Entry
135735909 CDS
T10799
Symbol
limch1a
Name
(RefSeq) LIM and calponin homology domains-containing protein 1a isoform X1
KO
K24422
LIM and calponin homology domains-containing protein 1
Organism
pdab Paramisgurnus dabryanus (large-scale loach)
Brite
KEGG Orthology (KO) [BR:
pdab00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
pdab04990
]
135735909 (limch1a)
Domain-containing proteins not elsewhere classified [BR:
pdab04990
]
LIM domain-containing proteins
Other lim domain-containing proteins
135735909 (limch1a)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DUF4757
CH
LIM
Motif
Other DBs
NCBI-GeneID:
135735909
NCBI-ProteinID:
XP_065110652
LinkDB
All DBs
Position
4:40480141..40525023
Genome browser
AA seq
1838 aa
AA seq
DB search
MASPEDDSASASQLDQAGSVENTREPAFQEAQKWIEAVTGRGFGDKDFRSGLENGIMLCE
LLSAVKPGLVKKINRLPTPIAGLDNLTVFLRGCEELGLKGSQLFDPGDLQDTSIRANLTG
LDCTRKLKNVLITIYWLGKAANGCATYNGPTLNLKEFEGLLTMMRKECVSEELDSPKRSI
RDSGYIDSWESERSDSLSPPRHGRDDSFDSLDSFGTRSQNTPSPDTVIRCNSDDSEGDSS
QRKLPDVRKDDMSARRVSYKEPRAALPFNQYLPNKSNQTTYLPAPLRKRRSEREEDRRSV
STSPVGGDRPLREESVGVLKKGAVVSRTPAFQKMLSWAGEKEVELEEAELKKFRKLEKAG
IKVLPAFVRYNSPNVVAVEADKAKPPSPDIILRRDNDFLRTAVSHEWDSNEEDDEEGPSK
VPDVQKDDLASRRARMNQFKPSVKHHFLPGSCSWKDREKWEGIRLASQHAVLERMEKMEQ
EKKSQADSASPEASIITRKDNPFLNPKKEREKERDDEDQREVGKRIVIPNLQKDDLAKRR
SGGGPRPPRDPQQSLVRSSITQSDLETWQRLKINTESSEADSALAEVSIITRKDNPFLTP
EKESESEEENKEVTDREAGGRVLVPNVEKDDLAKRRSQIGTVPQKDPRQSLTQTTMTQSD
LEKWQRLKMNTESSDEPIVPLCQTCLEKGCLSIASKAKVAKNDLASCRERPSGERRRFVT
FGGVTEMESTSWEDEEKEGEEEEGDEAEKLRYLLSIAPVAVPTIGLGSILTKRAVGSGNA
NPEPAIVVPPEPPNLLTFDLNRPSISVQHRELEEQIAEKVKEEKDDDDDEDEEERQVDIE
KDDMMARRTGSFQKSARGGAYNRFLPLPGSKKEINAAASSAQKGSNQMGLSGERDLQYLE
RNIKTKRTKIGQRIEPADQQAPVAIVTQKSSDIVRSPATGVDRSGDYNEYDERWDEDPPH
DVEKDDMLARRTGGYQKLRVGTGQPLNAFLPSPGAVKQKISPVTGLIQSKPREQETDSSL
DSFTLSSVAPPPRDAEDTPRKCPQMMDRQEAGSMGLVGRESLIKDETCTKSLNPMPEQAS
QQQDVDDLPPIFRATSVSDERESVSLIDMRDEEDEMSYLRPHSQSRHECLHNQYNKLKEE
EDQWQDDLVRWKNRRRSASQDLIKKEEERKMMEKLMTTDGGSRHQRKSIKTYKEIVEEKE
RREQELHEQYCKASTPEEKAAILQRYALRFTISDAILEKLQLPKLPSAATPVHTSPLHQP
VKSPAQTKEAEVPKPTQTSPTQPIDHTDQEIAQNQALENPKTSEQSLTKTQEVPSAPFRP
LPPSSKASSKPVSLITPKPYSQPKFNQGPRKSLKTDGLVRLNGESTQDDSRKSDAKRSPV
RSVPFTTTPLKTVTSSQPNEEKTVIETSHDQQNSQTSVPHQEKEDVKEEKESSPNIQEEN
SKEEISTTLSDSETAGKQSTPETVVKRNCVVTMTIVTELTQTHPIQPNGAPSTEQLCGSV
LNSCDLNSTESSKADQTSYSQSLTEGIDYASECIETPMLNLAKRVDHWTWDPNEERRRQE
KWQQEQERLLQEKYQREQEKLKEEWERAQREVEEEERRHHEEERRILEETVTPLTPRTSV
LPSASVTQPPQDTIVLSLADWDRKQEMLEKQSQTNQSNGLTDSPDQVITPAQQNGQRSEP
QESQTAIPQLQFIQDGTWTCKSKGRQEDLKKTASLDRNQTPPQSQTTGMRRTGSCENVLG
THPSNSPPPSQDTSPPSPSRSISGKKLCSSCAHPLGKGAAMIIETLGLYFHIQCFKCGIC
RGLLGDTSAGTDVRIRNGLLNCHECYIKSRAAGQPTTL
NT seq
5517 nt
NT seq
+upstream
nt +downstream
nt
atggccagtcctgaagacgattcagcatcggcttcccaattagatcaagccggatctgta
gaaaatacccgtgaaccagcatttcaagaagcacagaaatggatcgaggcagtgacagga
agaggattcggtgacaaggatttcagaagtggactggagaatggcatcatgctttgcgag
ttgctgagtgcggtcaaaccaggccttgtgaaaaagatcaacagacttccaacacccatt
gctggactagataatctgacggtgtttctgagaggatgtgaagagttgggactgaagggt
tcacagctctttgatccaggagacctgcaagatacgtcgatacgagcaaacctaacgggc
ttagactgcactagaaaactgaagaatgtgcttataactatatattggcttggtaaagct
gctaacggctgtgctacctataatggcccgacactcaacctgaaagagtttgagggactc
cttaccatgatgcgaaaggagtgtgtaagtgaagagttggactcccctaagcgcagcata
agggacagtggttacatagacagctgggaatcggagcggtcggattcgctgtctcctccg
aggcatggccgtgatgattcgttcgacagtctcgactcatttggcacccgatcgcagaac
acaccgtctccagacactgttattcgctgcaatagtgatgactctgaaggtgacagcagt
caaagaaagttgccggacgttcgtaaggacgacatgtctgcccgacgtgtctcctacaaa
gaaccccgtgccgcccttcccttcaaccagtacctgccgaacaaaagcaaccagaccacc
taccttcccgccccgctgaggaagaggaggagcgagagagaggaagataggaggagtgta
tcaacatctcctgtagggggcgacagacctctcagagaagaaagtgtaggggtattaaaa
aagggggctgtcgtgtctcgaacccctgcattccaaaaaatgctcagctgggcgggtgaa
aaagaggtggagctggaggaggcagagctgaagaaatttaggaagttggaaaaggcgggg
attaaagtattacctgcttttgtgcgatacaacagtcctaacgtggttgcggtggaggcc
gataaagctaaaccaccctctcctgacatcattctccggcgtgacaatgacttcctgcga
accgccgtctcacacgagtgggactcgaatgaggaagatgatgaagagggacccagtaag
gttccagatgttcaaaaggatgaccttgcttctcgcagggctcgcatgaatcagttcaaa
cccagtgtgaagcatcacttcctgccgggatcttgtagctggaaggaccgagaaaaatgg
gaaggaatcagactggcatcccagcatgcggtactggagaggatggagaagatggaacag
gagaaaaaaagtcaggctgactccgcctcccctgaggcgtcaatcataactcgtaaggac
aatcctttcctgaatcctaaaaaagagagagaaaaagaaagagatgacgaagatcagaga
gaggtaggaaagaggatagtcatcccaaaccttcagaaagacgatctggcgaagaggcgg
tctggaggggggccacgcccacccagagatccccaacagtcattggtccggtcttccatc
actcagtcagacctggagacatggcagagactcaagataaatacagagagcagcgaagct
gactccgccctcgcagaagtgtcgatcataactcgcaaggacaaccccttcctgacccct
gagaaagagagtgaaagtgaggaggagaataaggaggtgacagacagagaggcagggggt
agggtgctggtacctaatgtagaaaaagatgacctggccaaaaggcggagccagattggg
accgtcccacagaaagatcctcggcagtcattgactcaaacgaccatgactcagtcagac
ctggagaagtggcagagactcaagatgaatacagaaagcagcgacgagcccattgtccct
ctatgtcagacgtgtcttgagaaaggctgcctctctatcgcctccaaggctaaggttgca
aagaacgacctggccagttgccgggaacgtccctccggtgaacggcggcgttttgtgaca
tttgggggagtgacggagatggagagtacctcctgggaagatgaggagaaggaaggagaa
gaggaagagggagatgaggcagagaaacttcgatatctgctttcgattgcacctgttgct
gtgcccaccatagggctgggctccatactgacaaagagagcagtcggcagtggaaacgca
aaccctgagcctgccatagttgtgccccctgaacccccgaaccttctcacctttgacctc
aaccgaccctcgatctctgtgcaacacagggagctggaggagcagatagctgagaaagtg
aaagaggagaaggatgatgatgatgatgaagatgaagaggagaggcaggtggatatagaa
aaggatgacatgatggctcgtaggacagggtcgtttcagaagtcagcaaggggaggggcc
tacaacagatttctcccgctgccaggctctaaaaaggagataaatgcagcggcttcctca
gcccaaaaaggaagtaaccagatgggtttgagcggggagagagacctccaatatctggaa
agaaacataaagacaaagagaaccaaaattggacagagaattgaaccagctgaccaacaa
gccccggttgccatagttacccaaaagagctcagacatagtgcgatcacccgccaccggt
gttgaccgctctggcgattacaatgaatacgatgagcgttgggatgaagatccaccacat
gacgttgagaaggacgacatgcttgcacgtagaaccggaggttaccaaaaattaagagtg
ggaacgggacaacctcttaatgcgtttcttccaagtcccggtgcagtcaaacagaaaatc
tctcctgttactggattgatccagtctaagcctagagagcaggaaacagattcatctctg
gacagcttcacccttagctccgtggccccgcccccaagggatgctgaggacacgcctagg
aagtgccctcagatgatggacaggcaggaggcaggctctatgggtttggtgggaagggaa
agtcttattaaagatgagacttgtaccaaaagcctcaaccccatgcctgaacaagcctca
caacagcaggacgttgatgatctacccccaatattcagagctactagtgtttctgatgaa
cgagagagtgtgagtttgattgacatgcgcgatgaagaggatgagatgtcctaccttcgg
ccgcacagccaatcgcgacacgagtgcctgcacaaccagtacaacaaactcaaagaagag
gaggaccagtggcaagatgacctggttcgatggaagaatcggagacggagtgcctctcag
gatctgatcaaaaaggaggaagagaggaagatgatggagaagctgatgaccacggatgga
ggatctcgccatcagaggaagagcatcaaaacatacaaagagatcgtagaggaaaaagag
cgtcgtgaacaagagctacatgaacagtactgcaaggcctccaccccagaggagaaagca
gccatacttcaacgctacgctctccgtttcaccatcagtgatgccatattggaaaagctc
caactccctaaactgccttccgctgctacgccggtacacacctcgcctctccaccagcct
gtgaaatcgcccgcacaaacaaaagaagcagaggttcctaagcctacacaaacctcccca
acacaacccatcgaccatacagaccaggagattgcacaaaatcaggcgctggaaaatccc
aaaacatcggaacaatcacttaccaaaactcaagaagtgccatcggccccttttcgtcca
ctcccgccttcttcaaaggcttcctcaaagccggtgtcccttatcacccccaaaccctac
agccagcccaaatttaaccagggaccacgcaagtctctaaagactgatgggctggtgcgt
ttgaatggtgagagcactcaggacgacagcagaaagagcgacgctaaaaggtctccggtg
cgttctgtccccttcaccaccacacctctgaagacggtcacttccagtcaaccgaatgag
gagaaaactgtaatagagacctcgcatgaccaacagaactcacagacttcagtccctcac
caggagaaagaggatgtaaaggaggaaaaggaaagttctcctaacattcaggaagaaaac
agcaaggaagagatctcgactacactgtcagactcggaaacagcaggaaagcagtcgacg
cctgaaacagtggtgaagcgtaactgcgttgtcacgatgaccattgtgacagaactcact
cagacacaccccatccaaccaaatggcgcgcccagcacagagcagctttgtggttcagtt
ctaaattcgtgtgatttaaactccactgagtccagtaaagctgaccagacttcatactca
cagtcactaacagaggggatcgattacgccagtgaatgtattgaaaccccaatgttgaac
cttgcaaaaagggttgatcactggacgtgggatcccaatgaggagcgcagacggcaggag
aaatggcaacaagagcaggagcgactgctgcaggagaaatatcaaagagagcaggagaag
ctaaaggaggagtgggagagagcgcagagggaagtcgaggaggaggagaggagacatcat
gaggaggagaggcggattctggaggaaaccgtgaccccactgacccctcgcacctcagtt
ttgccctccgcaagtgtgacacagccaccacaggacactattgtcctgtcattggctgac
tgggacaggaaacaggaaatgctggagaaacagtcacagacgaaccagagtaatggcctg
acagacagtcctgatcaagtgatcacaccagctcagcagaatggccagagaagtgaacct
caggagagccaaactgctataccacaactacagtttatacaagatggcacatggacttgc
aaatctaagggcagacaagaggatttgaagaaaactgcctcactggaccgtaaccaaact
ccaccccagagtcagaccacagggatgaggaggactgggtcgtgtgaaaatgttttagga
acacatccatcaaattcacccccaccttcacaagacacatcgcctccatcacccagcagg
tcaataagtggaaagaagctttgctccagttgtgcacatccattgggcaaaggagcggct
atgatcatagaaaccttagggctgtacttccatattcagtgttttaagtgcgggatatgc
agaggtctgcttggggacacaagtgccgggacagatgtcagaattcgaaacggacttctt
aattgtcatgaatgttatataaaatcacgagctgctggccagccaacaacattgtga
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