Paramisgurnus dabryanus (large-scale loach): 135736003
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Entry
135736003 CDS
T10799
Symbol
rfc1
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
pdab Paramisgurnus dabryanus (large-scale loach)
Pathway
pdab03030
DNA replication
pdab03410
Base excision repair
pdab03420
Nucleotide excision repair
pdab03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pdab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
135736003 (rfc1)
03410 Base excision repair
135736003 (rfc1)
03420 Nucleotide excision repair
135736003 (rfc1)
03430 Mismatch repair
135736003 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pdab03032
]
135736003 (rfc1)
03400 DNA repair and recombination proteins [BR:
pdab03400
]
135736003 (rfc1)
DNA replication proteins [BR:
pdab03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
135736003 (rfc1)
DNA repair and recombination proteins [BR:
pdab03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
135736003 (rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
AAA_7
AAA_5
AAA_30
AAA_33
Rad17
AAA_17
RuvB_N
AAA_16
AAA_14
nSTAND3
BRCT_2
AAA_18
RNA_helicase
AAA_19
NTPase_1
NPHP3_N
AAA_28
Motif
Other DBs
NCBI-GeneID:
135736003
NCBI-ProteinID:
XP_065110801
LinkDB
All DBs
Position
4:44099830..44115405
Genome browser
AA seq
1133 aa
AA seq
DB search
MDIRRFFAPTKPAAPKPSNGSSGTEEEPKKRQKSKTKVTSPKPAEKPTGKRKKRGVFDSD
SEEEKKERKTKKSSKETVSPPVKTHPVTYVSDSDSDDTFLSLKKPTKPRENGKTKGKKES
DSGKTKEVKASSAKSPIKSPTAAVKAGVKSSKPTISPKTTPTPPKLTSVIDFFGSSSVQR
SDKKMVASTKRKAPTQDNDESLSDEAIAKQLQMDEDIDMEKQIHDDEEFAKTLAMLDEAP
LPKKARVDSVSPSKSSSQVDTKLKDSSPKKSPLKSSSKLAQMKRRQEEENEEKKKEKKIS
PKKEPISPNSSERAATPKTGSASMGTTKSRSISTPKGGAPSKTSPTKPENISPEDPEKKR
ANSSAYRNYLNRDGPRALGSKEIPQATENCLEGCVFVLTGVLESLERDDAKSLIERYGGK
VTGNVSRKTSYLVLGRDSGASKTEKAESFGTKIINEDELFDLIRTKPGKKSKYEIAAEAE
NKSATAKTPDSRGKRTPPAKKTTPPGPSPKKKSPSAGKSKSGSVSETSVASRSSSEVKKS
LAYDQTKTASPGSQSTPENDGYSLLWVDKYRPRSLKNLIGQQGDQSCANKLVRWLQNWHR
HHSGNAKAPPAKFSKFGGKDDGSGFKAALLSGPPGVGKTTTAALVCEELGYSYVEMNASC
TRSKNSLKEVIAESLNNTSIKNFYTGASQTVSSKHVLIMDEVDGMAGNEDRGGIQEMIGL
IKQSKIPIICMCNDRNHQKIRSLANYCYDLRFQRPRVEQIKAAMMSVAFKEGLKVPPPAL
NEIILASNQDIRQVLHNLSMWSAKDKVMTYDQAKADANNAKKDMKMGPFDVCRKVFASGE
ESAHMSLIDKSDLFFHDYSLAPLFVQENYVNVRPAAAGGNLKNHLVLLSKAADSICDGDL
VDRQIRSKQTWSLLPTQAIYASVLPGELMRGYMSQFPTFPSWLGKFSSAGKYSRIIQEIA
SHTSLKTLSSKEAINLDYLPYLRLAILEPLQSQGAEGATQSVKLMDDYDIIKEDVDNIME
ISTWGGQPDSYSKLDSKVKAAFTRAYNKESHLTPYSLHVVKKGRKGAVDPELVGDLDSGS
QIQEEEEEDDGLTADAMIKQKKAKPVKKEAKQEKALDSGKGKGKGKGKGKKKD
NT seq
3402 nt
NT seq
+upstream
nt +downstream
nt
atggacatccggaggttttttgcgcctaccaaacctgcagcgcccaaaccttcaaacgga
agcagcggaaccgaagaagagcccaaaaagagacaaaaatcaaaaactaaggtcacaagt
cccaaacctgctgagaaacccactggaaaacgaaagaaaagaggtgtattcgattcagac
tctgaggaagagaagaaagagaggaagactaagaaaagctccaaagagactgtttcccca
ccagtaaagacacatccagttacttatgtgtctgattcggattcagatgatacatttttg
tctctgaaaaagcctaccaaacccagagaaaatggaaagactaaagggaagaaggaatcg
gactctggaaaaacaaaagaggtaaaggcatcctccgctaaatctccaatcaaatccccg
actgcggctgtgaaggcaggggtgaagagctccaagcccaccatctcccccaagacaaca
ccgaccccgcccaaactcacctcagtaatagatttttttggaagctcaagtgttcaaaga
tcggacaaaaagatggttgccagcactaaacgaaaagcacccacacaggataatgatgag
tccctcagtgatgaagccattgcgaaacaacttcagatggatgaagatatagatatggag
aagcagattcatgatgatgaggaatttgcaaaaacattagccatgcttgatgaagccccc
ctgccgaaaaaggctcgtgtagattcagtctcaccatccaagagcagctctcaggtagat
accaagttaaaagactcatcacctaagaaaagccccctcaagagtagctctaaactggct
caaatgaaaagacgacaagaagaagagaatgaggaaaagaaaaaagaaaagaaaatctct
ccaaagaaagagcccatctcaccgaatagttcagaacgggcagccacgcccaaaacagga
agtgcgtccatgggaacaacaaaatcaagaagtatttccacacctaaagggggggcaccc
agtaaaacctcaccgacaaaaccagagaatattagtcctgaggaccctgagaagaaacgg
gcaaattcatcagcctaccgaaactatctgaacagggatggcccacgagccctgggctct
aaagagataccacaggctacagaaaactgtctggagggctgtgtgtttgtgttgacgggt
gtgttagagtctctggaaagagatgatgccaagtcgttaatagagcggtatggcgggaaa
gtcacaggaaacgtcagtcgcaaaacatcttatcttgttctgggacgtgatagtggagcc
tcaaaaactgagaaggcggaaagttttggaaccaagatcattaatgaagatgagttgttt
gaccttataagaaccaagccaggcaagaagtcgaagtatgaaattgcagcagaagcagag
aataaatctgctacagcaaagaccccggattctagaggcaaacgcactcctccagccaag
aagaccacgccaccagggcccagccccaaaaagaaaagcccttcggccggcaagtctaaa
tccggctcggtctctgaaacatctgtggcgtctcgttcaagttcagaagtcaaaaaaagt
ttggcctatgatcagaccaaaacagcatcacctggatctcagtccacaccagagaatgat
ggatacagcctgttatgggtggataaataccgtccccgcagtctgaagaatctaattggg
cagcaaggggatcaaagttgtgctaacaaacttgtgcgatggttgcaaaactggcacaga
catcacagcggcaatgcaaaagcaccaccggccaagtttagtaagtttgggggcaaagat
gacggttccgggttcaaggctgcgctgttgtcgggccctcctggcgtcgggaagaccaca
accgctgctctcgtctgcgaggagttgggttacagctacgtggagatgaatgccagttgc
acccgcagtaagaacagtttaaaagaagtgattgcagaatcactcaacaacaccagcatt
aaaaacttctacacgggtgcatctcagacagtgagcagtaaacacgtcctcataatggac
gaggtggacggaatggcaggaaatgaagaccgaggaggaatacaggagatgattggtctg
ataaagcagtcaaagattcccatcatctgcatgtgtaacgaccggaatcatcagaagatc
cgctcactggctaactactgttatgacctgcgctttcagagaccccgggtggagcagatt
aaggcagcaatgatgtctgtggcctttaaagaggggttgaaggtcccacccccagcactt
aatgaaatcatcctggcctccaatcaggatattcgacaggtgctgcataacctgagcatg
tggtcggctaaagacaaagtcatgacctatgaccaagccaaagctgatgctaacaatgcg
aagaaggacatgaaaatgggtccatttgatgtgtgtcgaaaggtgtttgcttcaggagag
gaaagtgctcacatgtctttgattgacaagtcagaccttttcttccatgactactcgtta
gcgccgttgtttgtccaagagaactacgtaaatgtccgaccggccgcggcaggggggaat
ctgaagaatcatttggtgttgttgagtaaagcagcagacagtatttgtgatggagattta
gtggacagacagatccgcagcaagcaaacctggtctcttcttcccacacaggcgatctat
gcaagtgtgttgccaggggaactgatgcggggttatatgagtcagtttccaacgtttccc
agctggttgggcaaattctcatcagctggcaaatacagccgtatcatacaggagatcgct
tcacacacaagtctgaagacgctaagtagcaaggaagcaataaatctggattacctaccg
tatttgcgcttggcaatattagagcctcttcagtctcaaggcgcagagggagccactcag
agcgtgaagctcatggatgattatgacatcatcaaagaggatgttgataacataatggag
atcagcacatggggcggacagccagattcctactctaaactagattcaaaggtgaaagct
gcgtttacacgggcgtacaataaagaatctcatctaactccgtattccttacacgtggtc
aagaaaggccgtaaaggcgctgttgaccctgagcttgtaggggatcttgacagtggatct
cagattcaggaagaggaagaggaagatgatgggctcactgcagatgccatgatcaagcag
aagaaagccaaaccagtgaaaaaagaagccaagcaggagaaagcactggattctggaaag
gggaaaggcaagggtaaagggaaagggaagaagaaagactga
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