Paramisgurnus dabryanus (large-scale loach): 135738243
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Entry
135738243 CDS
T10799
Symbol
trim54
Name
(RefSeq) tripartite motif-containing protein 54
KO
K10653
tripartite motif-containing protein 54
Organism
pdab Paramisgurnus dabryanus (large-scale loach)
Pathway
pdab04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pdab00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
135738243 (trim54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pdab04121
]
135738243 (trim54)
Ubiquitin system [BR:
pdab04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
135738243 (trim54)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_UBOX
zf-C3HC4
RING_XB3-XBAT31
zf-B_box
zf-C3HC4_2
zf-RING_5
TRIM_CC
zf-C3HC4_4
zf-C3HC4_3
zf-RING_6
zf-RING_2
Sina_RING
EFR3_ARM
CYP38_PsbQ-like
Gpi16
CoiA_N
RHH_9
Zn_ribbon_FGT1_2
Motif
Other DBs
NCBI-GeneID:
135738243
NCBI-ProteinID:
XP_065112255
LinkDB
All DBs
Position
12:complement(3223001..3242491)
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AA seq
360 aa
AA seq
DB search
MNFALGFKAAMGDASSVVNLEKQLICPICLEIFTKPVIILPCQHNLCRKCANDVYQASNP
LWQDRGSTTVSSGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKSETSRPLPPKT
EQQQLMCDQHEEEKINVYCLTCEMPTCSMCKVFGGHKDCEVAPLQVIYKRQKTELSDAIA
ILVAGNDRVQALISQMEDICRNVKDNSRQQMQHISDKFDELYAILEERKRDLMERICNEQ
DQKLGHVRGLIRRHGDHLEMSVKLVETAIQSMEEPQMAVFLQSAKEVFKKITDTAKDSNI
ERTEAGYESMAHFTVHTEDVADVLRSIDFQTGEDLKDSADEVLKDLTTSTGHQSGEPGRP
NT seq
1083 nt
NT seq
+upstream
nt +downstream
nt
atgaactttgctctgggctttaaagcagcgatgggagatgccagctcagtcgtgaaccta
gagaagcagctcatttgtcccatatgtctggagatattcaccaaacctgtgataatttta
ccctgtcagcacaatctctgcaggaaatgtgccaatgatgtttatcaggcctccaacccc
ctttggcaagaccgtggatctacaactgtgtcctcaggaggacgtttccgctgcccatca
tgccgtcatgaggtggttttagaccggcatggtgtatatggcctacagaggaatcttctt
gtggagaatatcattgatatctacaaatcagagaccagcaggccgctcccgcccaaaaca
gagcaacaacagttgatgtgtgaccagcacgaggaggagaagatcaacgtctactgcctt
acctgtgagatgcccacctgctccatgtgtaaggtgtttggaggtcacaaggactgtgag
gtggccccgctgcaggtcatctacaagagacagaagacggagctaagtgatgcaatagcc
atcttagtggccggaaatgacagagtacaagcgctgatctcacagatggaagatatttgt
aggaacgttaaggataatagtcggcagcagatgcagcatatctctgataaatttgatgaa
ctttatgccatcctggaagagcgtaaaagggatctaatggaacgtatatgcaatgagcaa
gaccaaaaactgggtcacgtacgcggtctcatccgtcgccacggagaccatttggagatg
tctgttaaactggtggagacagccatccagtccatggaggaacctcagatggctgtgttc
ctacagagtgcgaaggaagtgttcaaaaaaatcacagacactgccaaggactccaacatt
gagcggacggaggccggctatgagagcatggcccacttcaccgtccacacagaggatgtg
gctgacgtgctgagatccatcgacttccaaacaggtgaagatttgaaagacagtgcagat
gaagttcttaaagacctgaccacctcgaccggtcatcagagtggtgaaccagggagaccc
taa
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