Paramisgurnus dabryanus (large-scale loach): 135738419
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Entry
135738419 CDS
T10799
Symbol
fdft1
Name
(RefSeq) squalene synthase isoform X1
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
pdab Paramisgurnus dabryanus (large-scale loach)
Pathway
pdab00100
Steroid biosynthesis
pdab01100
Metabolic pathways
Module
pdab_M00101
Cholesterol biosynthesis, FPP => cholesterol
Brite
KEGG Orthology (KO) [BR:
pdab00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
135738419 (fdft1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
pdab01006
]
135738419 (fdft1)
Enzymes [BR:
pdab01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
135738419 (fdft1)
Prenyltransferases [BR:
pdab01006
]
Terpene biosynthesis
Squalene/phytoene synthase
135738419 (fdft1)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
TM1266-like
GST_C_8
Octopine_DH
GBP_C
Motif
Other DBs
NCBI-GeneID:
135738419
NCBI-ProteinID:
XP_065112528
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Position
12:complement(11220741..11228352)
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AA seq
449 aa
AA seq
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MAGVCGKSAVSFSVLKRSISLRGSPRSVLTGGGRRSAQEGRLVACPPHPLTTHRHPTYLC
FSCQDSMSETLRTCYLYLNQTSRSFAAVIQALDGELRHAVCIFYLVLRALDTVEDDMTIP
LEKKVPLLHDFHKFLYQPDWCFTESNEKDRRVLEDFPTISVEFRNLGLQYRDVISNICHR
MGVGMAEFLEKKVGSMKEWDKYCHYVAGLVGIGLSQLFSASQLEDPEVGRDTELANSMGL
FLQKTNIIRDYLEDQQDGRAFWPQEAWSQFTSRLEDFAQPQNLSSALSCLNLLVTDALRH
VPDVIVYLSRLRNQSVFNFCAIPQVMAIATLSACYNNPNVFQGVVKIRKGQAVTLMMQAT
NMGAVQSIIAQYSQEILQKVSIIDPSREKTLQILSVIREKSLSPAALSSRAHHLSPIYVS
AAMLLAALSWQYLNATAGQPPGGTDMPGH
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atggctggggtgtgtggcaaaagcgcagtgtcgttctccgtcctcaaacgctcgatctcg
ctgcggggctccccgcgctcggtgctcaccggcggagggcggcggagcgcgcaggaaggg
cggctggtggcctgtccgcctcacccgctcacgactcaccgacaccccacgtatctgtgc
ttttcctgccaggactccatgagcgaaaccctgcggacctgttacctgtatctgaaccaa
acgagtcggagcttcgcggctgtgatccaggcgctggatggagagttgcgacatgcggtg
tgtatattttatctggttctgcgagccctggatacagtggaagatgacatgacgatccca
ttggagaagaaagttcctcttctgcatgacttccataagttcttataccagccagactgg
tgcttcacagagagcaatgagaaggaccgacgggttttggaggatttcccaacgatttca
gtggagttcagaaatctgggcctgcagtatcgggacgtgatctcgaatatttgtcaccgg
atgggtgttgggatggcagaattcctggagaagaaagttggttccatgaaagagtgggac
aagtattgtcattatgtggcgggtctggtcgggatcgggctgtctcaactcttctctgcg
tctcagcttgaggatcccgaggtgggtcgtgacacagaactggccaattcgatgggtttg
tttcttcagaagacaaatatcattagggactatctggaggaccagcaggatggtcgggcc
ttttggcctcaggaggcctggagtcagttcacatcccgtctagaggattttgcccaacct
cagaacctaagctccgccctttcctgtctcaacctgctggtgacagacgctctccgccac
gtccctgatgtcattgtgtacctgtcccgccttcgtaaccagagtgtctttaacttctgt
gccatccctcaggtgatggcgatagcgactctgtctgcgtgctacaacaaccctaatgtg
tttcagggcgtggtgaaaatccgaaagggtcaggccgttactctcatgatgcaagccaca
aacatgggtgccgttcagagtatcattgcacagtacagtcaggagatcctacagaaagtt
tccataattgatccttctcgggagaagacgctgcaaatcctgagcgtcatcagagagaag
agtctttctccggcagcgctctcctcgagggcgcatcacctctcacccatctatgtctct
gcggccatgttgttggctgctctcagctggcaatacctcaatgccacagcagggcaacca
ccagggggcacagacatgccaggtcattga
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