KEGG   Paramisgurnus dabryanus (large-scale loach): 135741373
Entry
135741373         CDS       T10799                                 
Symbol
sf3a1
Name
(RefSeq) splicing factor 3A subunit 1 isoform X1
  KO
K12825  splicing factor 3A subunit 1
Organism
pdab  Paramisgurnus dabryanus (large-scale loach)
Pathway
pdab03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pdab00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    135741373 (sf3a1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pdab03041]
    135741373 (sf3a1)
Spliceosome [BR:pdab03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    135741373 (sf3a1)
 Complex B
    135741373 (sf3a1)
 Complex C
   U2 SnRNP specific factors
    135741373 (sf3a1)
SSDB
Motif
Pfam: PRP21_like_P Surp ubiquitin Rad60-SLD Ubiquitin_2
Other DBs
NCBI-GeneID: 135741373
NCBI-ProteinID: XP_065116109
LinkDB
Position
11:23325050..23329973
AA seq 786 aa
MPPGPVQIVQPEPNNKQPDEQKEETPATKPIVGIIYPPPEVRNIVDKTASFVARNGPEFE
ARIRQNEINNPKFNFLNPTDPYHAYYRHKVNEFKEGKAQEPSAAVPKVMQQQASSQQLPQ
KVQAQVIHESMVPKEPPPEYEFMADPPSISAFDLDVVKLTAQFVARNGRQFLTQLMQKEQ
RNYQFDFLRPQHSLFNYFTKLVEQYTKVLIPPKGLLIKLKKEAENPPDVLDQVRHRVEWA
KFQERERKKEEEEREKERVAYAQIDWHDFVVVETVDFQPHEQGNFPPPTTPEELGARILI
QERYEKFGESEEVEMEVESEDEEDERETRQDGHTSQMDQDTQLQDMDEGSDEDEDGMKAP
LPPDNPLPPPLPPTPDHVIIRRDYDPKASKPQAPVTTSDEYLISPITGERIPASKMQEHM
RIGLLDPRWLEQRDRSIRERQIEEEVYAPGLDIESSLKQLAERRTDIFGVEETAIGKKIG
EEEIQKPEEKVTWDGHSGSMARTQQAAQANITLQEQIEAIHKAKGLVQEDDTKEKIGPSK
PNEMPQPPLLSAAPSMPKPSPPVNTMPGPTPVMAPPVRTTLLPAVPVIPRPPVAPVVRLA
PGQVLAPMPPMLHAPRINVVPMPPPAPHIMAPRPPPMVVPTAFVPAPPVPQPPSGVSAPH
PPSHPPPPHDDEPSSKKMKTEDNLIPEEEFLRRNKGPVAVKVQVPNMQDKTEWKLSGQVL
NFNLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMNNGSVIHLALKE
RGGRKK
NT seq 2361 nt   +upstreamnt  +downstreamnt
atgccgcctgggcctgtgcagatcgtgcagccggagccaaacaacaagcagcccgatgag
cagaaagaagagactccagccacaaagcccatcgtgggaatcatctacccacctcctgaa
gtccgaaacattgttgacaagacagctagctttgtggccagaaatggaccagagtttgaa
gccagaattcgacagaatgagatcaacaacccgaaattcaacttcctcaaccctaccgac
ccttatcatgcctactaccgccacaaggtcaatgaattcaaggagggtaaagctcaggaa
ccgtctgcggcggtccctaaagtcatgcaacaacaagcatcatcacaacagcttcctcag
aaggttcaagcgcaggttattcatgaaagcatggtacccaaggagcctccacctgaatat
gagttcatggccgaccctccctccatctccgcctttgatctggatgttgtgaagctgact
gcacagtttgtcgcccgaaatggtcgtcagtttctgacgcagctgatgcaaaaggagcag
aggaactaccagtttgacttcctgcgacctcagcacagcttgttcaactactttaccaaa
ctggtcgagcagtacacaaaggttttgatccccccaaaaggtcttctgataaaattgaag
aaggaagcagagaatcctcctgatgtcctagaccaggtgagacatcgtgtggagtgggcc
aaatttcaggaaagagagcgaaagaaggaagaggaggagcgagagaaggagagagtggct
tatgctcagatagactggcatgattttgtagttgtggagactgtggactttcagcctcat
gaacagggtaatttccctcctcctacgacccctgaggaactgggtgctcgtatcttgatc
caggagcgctatgagaagttcggagagagcgaggaggttgagatggaggtggaaagtgaa
gatgaagaggatgaaagggagaccagacaagatggacatacctctcagatggaccaagac
acacaactgcaggacatggacgagggctctgatgaagatgaagatggtatgaaggctcct
ctgcctcctgataaccctctgccgcctcctctgccccccaccccagaccatgttattatt
cgcagagattacgaccccaaggcctctaagcctcaagctcctgtcaccacctctgatgaa
tacctcatctcgccaattaccggtgagaggatcccagccagtaagatgcaggagcacatg
cgcatcggactgctggacccgcgctggctggagcagcgtgaccgaagcatccgtgagcgt
cagatcgaggaggaggtgtacgctcccggcctggacatcgagagcagccttaaacagctg
gccgagagacgtacagatatcttcggtgtggaagaaacggccattggtaagaagatcgga
gaggaggagatacagaaaccagaggagaaggtcacatgggatggccactcaggcagtatg
gctcgtactcaacaagcagctcaggctaacatcaccctgcaggagcagattgaggccatc
cacaaagctaaaggtctggtgcaagaggacgacaccaaggagaagatcggtcccagcaag
cccaatgagatgccacagccacctctgctctcagcagcacccagtatgcccaaacccagc
ccaccagtcaacaccatgcctggacccacgcctgttatggctcccccagtgcggaccacc
ttgcttccggctgttccggttataccccgtcccccagtggcccctgtggtgcgtctggcc
cccgggcaggttctggcccccatgccgcccatgctgcacgccccccgcatcaatgttgtg
cccatgccaccccccgcaccacacatcatggcacccagacctccacctatggtggttcct
actgcgtttgtacctgctccaccggttcctcaacctcccagtggtgtttccgccccacat
cctccttctcaccctccacctcctcacgatgatgaaccctccagcaagaagatgaagacc
gaggacaacctgattccagaggaagagttcttgcgtaggaacaagggacctgttgcagtt
aaggtgcaggtacccaacatgcaagacaagactgaatggaagctcagtggtcaagtgctc
aactttaacctgcctctcacagaccaggtgtctgtcatcaaggttaaaattcatgaggcc
actggtatgcctgctggaaaacagaaactgcagtatgagggtattttcatcaaagattcc
aactctctggcttattacaacatgaacaatggatctgtcattcatcttgcccttaaagag
agaggaggaagaaagaaatag

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