Paramisgurnus dabryanus (large-scale loach): 135744196
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Entry
135744196 CDS
T10799
Symbol
lig1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
pdab Paramisgurnus dabryanus (large-scale loach)
Pathway
pdab03030
DNA replication
pdab03410
Base excision repair
pdab03420
Nucleotide excision repair
pdab03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pdab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
135744196 (lig1)
03410 Base excision repair
135744196 (lig1)
03420 Nucleotide excision repair
135744196 (lig1)
03430 Mismatch repair
135744196 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pdab03032
]
135744196 (lig1)
03400 DNA repair and recombination proteins [BR:
pdab03400
]
135744196 (lig1)
Enzymes [BR:
pdab01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
135744196 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
135744196 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
135744196 (lig1)
DNA replication proteins [BR:
pdab03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
135744196 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
135744196 (lig1)
DNA repair and recombination proteins [BR:
pdab03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
135744196 (lig1)
NER (nucleotide excision repair)
Other NER factors
135744196 (lig1)
MMR (mismatch excision repair)
Other MMR factors
135744196 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
135744196
NCBI-ProteinID:
XP_065118250
LinkDB
All DBs
Position
6:complement(3354469..3377709)
Genome browser
AA seq
1029 aa
AA seq
DB search
MQRSIASFFQPKKGNEKNDGQLKAKSEPVKSPLKIQNGVQESDSPVKKVNKRSRQIIDSD
DEDQPMVKEQVTKDNEAPAVKPEKAVSAPVSPKPPMTPSTPVTSNNSVDMVTPASSGTPG
TPATPTSTSPSGIPKRKTARKQFPKRKLECRSDGEGTKEEEKGVEGGQESKRARVEDSPG
QTENENEMMEVEEKSGDEKPMVEEQKEEDEPKKSVDIDVHDNDKRKAKTGENDDKPEKKL
NGANKKKEKEDEKEKDVSKVVEKEKKTVEKVDEKKKHASSPARVVKKEKKTEEKVDEKKK
DVSSPERVEKKEKKTEEKEGSAKKKPISSFFAPRKAAVKLEKEEQKEGEKKKAGETPAIF
EQKDKKSEKGVESADQSQYDPSRANYHPIDHACWMRGQKVPYLAVARTFEKIEEDSGRLR
NIETLSNLLRSVILLSPDDLLCCVYLCLNQLGPAYQGLELGIGETILMKAVAQATGRQLD
KIKAEAQEKGDLGLVAESSRSNQRMMFAPASLTASGVFNKLKEIANMSGNSAMNKKIDII
KGLFVACRFSEARYIVRSLAGKLRIGLAEQSVLAALSQAVCLTPPGQEFPPAVLDAGKGM
STDSRRAWLEEKALILKQTYCEMPNYDAILPVLLKEGIDELPNHCKLTPGVPLRPMLAHP
TKGVGEVMKRFDEATFTCEYKYDGERAQIHILENGEVHIFSRNQENNTSKYPDIISRIPQ
VKKESVRSCVLDSEAVAWDREKKQIQPFQVLTTRKRKDVDASEIKVQVCVYAFDLLYLNG
ESLVREPLSKRRALLRESFEEREGEFVFAKSLDSDNTECIAEFLEQSVRDSCEGLMVKTL
DKHATYEIAKRSHNWLKLKKDYLEGVGDTVDLCVIGAYLGKGKRAGSYGGFLLACYDEEN
EEFQSVCKIGTGFKDEDLEQHYNFLKEHILPKPRPYYRVDQSAEPDVWLEAVQVWEVKCA
DLSLSPVYKAAMGLVDPEKGISLRFPRFLRIRDDKKPEDATAGSQIADLYKKQQQIQNQG
DKPDLEDYY
NT seq
3090 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgaagcatagcgtccttctttcagccgaagaaaggcaatgagaagaatgatgga
cagctcaaagcaaagtctgaacctgtgaaaagtcctctcaaaattcagaatggcgtacag
gaaagtgattcaccagtgaagaaggttaacaagcgtagcagacaaatcatagacagcgat
gatgaagatcagccaatggtaaaagagcaggtgaccaaggacaatgaagccccagcagta
aagcctgagaaggctgtgtccgctcctgtgtctccaaaaccccccatgaccccatcaact
cctgtcacttcaaacaactctgttgacatggtaacccccgcttcctcaggtactccagga
acaccggcgactccgacatcaacatcaccgtcaggcattcccaaacgcaagacagcccgc
aaacagttccccaagagaaagctggaatgcagaagcgatggagaaggaacgaaagaggag
gagaagggggtagagggaggtcaggagagtaaaagagcacgagtagaggactcacccggt
cagacagagaatgagaacgagatgatggaggtggaagagaagagtggagacgaaaagcct
atggtggaggagcagaaagaggaggatgaaccaaaaaaaagtgtagacatagatgtgcat
gacaatgacaagaggaaagcgaagactggtgaaaacgatgataaaccagagaaaaagtta
aatggagcgaataagaagaaagaaaaggaggatgagaaagagaaggatgtaagcaaagtg
gtggaaaaagagaaaaagacagtagaaaaggtggatgagaaaaagaaacacgcgagcagc
cctgcaagagtggtgaagaaagagaaaaagacagaagaaaaggtggatgagaaaaagaaa
gacgtaagcagccctgaaagagtggagaagaaggagaaaaagacagaagaaaaggaggga
tcagccaagaagaaacctatcagcagtttttttgcccctagaaaagcagcagtgaaactg
gaaaaagaggagcagaaggagggggagaagaaaaaggctggagagacccctgctatcttc
gaacagaaagacaagaaaagtgaaaagggggtggagtctgctgatcagagccaatatgat
ccttcaagagcaaattaccatcccattgaccatgcctgctggatgaggggacaaaaggtg
ccatatttggctgtcgctcgcacctttgagaagatcgaagaagattcaggcaggctgagg
aatatcgaaacactttctaaccttctgcgctctgtaattctgctctcgccagatgacctg
ctgtgttgtgtatacctgtgtctgaaccagcttggcccagcgtatcagggtctggagctg
ggcattggtgaaaccatcttgatgaaagctgtcgctcaagcaacagggcgacagctggac
aaaatcaaagcggaagctcaggagaaaggagacctgggattagtcgcggagagttcacgc
agcaaccaaaggatgatgtttgcaccagccagtctgacggcaagtggcgtatttaacaaa
ctgaaggagattgccaacatgagcgggaactctgcaatgaataagaagatcgacattatt
aaaggcctgtttgtggcatgtcgtttttctgaggcccgctacattgtgaggtcattggcg
gggaagctgagaatcggattggctgagcagagcgttctcgcagctctcagtcaggctgtg
tgtctgacgcccccaggccaagagtttccacccgctgtgttggatgctggtaaaggaatg
agtacagacagcaggagagcttggctggaggagaaagcactgatcctgaaacagacatac
tgtgagatgcccaattacgatgctatccttccggtcttgcttaaagaaggcatagatgaa
cttcccaatcattgcaagctcaccccaggtgtgcccttgcggcccatgttggcccaccca
actaaaggggtcggcgaggtaatgaaacgatttgatgaggctacattcacctgtgaatat
aaatatgatggagagcgtgctcagatccatattcttgaaaacggggaggtgcacattttt
agccgaaatcaagagaacaacacaagcaaatacccggatattatctctcgaataccacag
gtgaaaaaagaaagtgtacgctcctgtgttctagattcagaggcggtggcctgggacaga
gaaaagaaacagattcagccgtttcaggttcttaccacacgcaagagaaaggatgtggac
gcatctgagatcaaggttcaggtgtgtgtctacgcctttgacctgctctacctgaatgga
gagtctctggtacgagagcctctgagcaaacgccgggctctgttacgagagagttttgag
gagagagagggcgagtttgtcttcgcaaaatccctcgactctgacaatacagaatgtatc
gctgaattcctggagcagtctgtacgagattcctgcgagggtttaatggtgaaaacgttg
gataaacacgcgacatatgagattgccaaacgctctcacaactggctcaagctaaagaag
gattatctggagggtgtcggggacactgtagatctatgtgtgattggagcttatctggga
aagggaaagagagcaggcagctatggaggatttttactggcctgttacgatgaggaaaac
gaggagttccagtctgtctgcaagattggaactggctttaaagatgaagatctggagcaa
cattacaatttcttgaaggagcacattttacctaaaccacggccttattaccgcgtggac
caatcggcagaaccggacgtttggctggaggcggtgcaagtgtgggaggtgaaatgtgct
gacctttcactatcgccggtctacaaagcagccatgggattggtggacccagagaaaggg
atttcacttcgttttccacgattcctcaggatcagagatgacaaaaagccagaagatgcc
accgcaggttcacagattgctgatctctacaagaaacagcaacagattcaaaatcagggt
gacaaacctgatttggaggactactattga
DBGET
integrated database retrieval system
