Paramisgurnus dabryanus (large-scale loach): 135744232
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Entry
135744232 CDS
T10799
Symbol
upf1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X2
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pdab Paramisgurnus dabryanus (large-scale loach)
Pathway
pdab03013
Nucleocytoplasmic transport
pdab03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pdab00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
135744232 (upf1)
03015 mRNA surveillance pathway
135744232 (upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdab03019
]
135744232 (upf1)
Enzymes [BR:
pdab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
135744232 (upf1)
5.6.2.5 RNA 5'-3' helicase
135744232 (upf1)
Messenger RNA biogenesis [BR:
pdab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
135744232 (upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
135744232 (upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
NAT10_TcmA_helicase
DEAD
UvrD-helicase
SRP54
AAA_16
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
135744232
NCBI-ProteinID:
XP_065118299
LinkDB
All DBs
Position
6:complement(10370812..10398595)
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AA seq
1100 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEESELLGADTQGSEFEFTDFTLPSQTQTQGQTQSQLDNQVNG
PDGGLPNGEDAVATTVQLLADLNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSK
KWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKA
DSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQ
INKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLK
ESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDMAPLWKGIGHV
IKVPDNYGDEIAIELRSSAGAPVEVPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGY
IYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTV
TSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLA
LHNQIRNMDSMPELQKLQQLKDETGELSSSDEKRYRALKRTAERELLMNADVICCTCVGA
GDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGL
SQSLFERLVVLGIRPIRLQVQYRMHPSLSAFPSNIFYEGSLQNGVTAADRIKKGFDFQWP
QPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQR
SYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLN
VALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLV
NTINPGARFMSTAMYDAREAMIPGSVYDRSSTGRPSNMYFQTHDQVGMIGTGPNPMGSLN
IPIPFNLVMPPMPPPGYLGQVNGPAAGRGAPKGKTGGRGGRQRNRGTGNHGSGQANMPSS
QASQDLVSQPFSQGPLTQGYITMSQPSQMSQPGLSQPELSQDSYLGDEFKSQMDVALSQD
STYQGERAYQHGGVTGLSQY
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacggcccgagctcacagacgctcaccttcctggacacggaggaa
tcggagctgcttggggccgacacgcagggctccgagttcgagtttaccgacttcacgcta
cccagtcagacccaaacccagggccagacccagagtcaacttgacaaccaggtgaacgga
cctgatggaggtctgcccaatggagaggatgcagtggcgacgaccgtccaactactggcc
gatctgaattttgaggaggatgaggaagatacttactacactaaagacctgccggtgcac
gcctgcagctattgcggcatccatgatccagcatgcgtggtttattgcaacaccagcaag
aagtggttttgcaacggtcgtggtaacacctctggcagtcacattgtgaatcatttagtg
agggccaaatgtaaggaggtgaccctgcataaggatggcccgctgggcgagaccgttctg
gagtgttataactgtgggtgtcgtaacgtcttcctgcttggcttcatcccagctaaagcg
gattctgttgtggttcttctgtgcaggcagccgtgtgccagtcagagcagtctgaaggac
attaattgggacagttctcagtggcagcctctcattcaggaccggtgctttctgtcctgg
cttgtgaagatcccatccgagcaggagcagctgagagctcgtcagatcaccgcccagcag
atcaacaaactcgaggagctctggaaggaaaacccaacagccaccctggaggatctggag
aaacccggagtggatgaagaacctcagcatgttttgctgcgatacgaggacgcctatcag
taccagaacattttcgggccactcgtcaaactagaggccgattatgacaagaaactcaaa
gagtcccaaactcaagataatataacagtcaggtgggacttggggctgaataaaaagcgg
atagcttatttcactctgcccaagacggattcaggtgacatgcgactgatgcagggcgat
gagatctgtctgcgctataaaggagacatggctccactctggaaagggattggacatgtc
atcaaagtccccgacaattatggagacgagatagccatcgagctgcggagcagtgctgga
gcacctgtggaagtgccacacaacttccaggtggactttgtctggaagtccacatctttt
gaccgaatgcagagcgccctcaagacgtttgctgtggatgagacgtctgtgtctggctat
atctaccacaagctgttgggtcatgaggtggaggatgtgatcatcaaatgccaactgcct
aaacgtttcactgcacagggcctgccagacctcaatcattcacaggtttacgcagtgaag
accgttctgcagagacctctcagtctgatccaaggacctccgggaactggcaagaccgtg
acctcggccaccatcgtctaccatctggccagacagggcaatggcccagtgcttgtatgt
gctccgagtaacatcgcagtggaccagctaaccgagaagatccatcagacggggttgaag
gtcgtgcgtttgtgtgctaagagtcgtgaggccatagactcacccgtgtctttcctggct
ctccacaaccagatccgcaacatggacagcatgccagagttacagaaactgcagcagctg
aaggatgagaccggcgagctgtcgtcatcagatgagaaacgataccgagctctcaaacga
accgctgaaagagaactgctcatgaatgcagatgtgatctgttgcacgtgtgttggagcg
ggtgatcctcgtctggctaagatgcagttccgctccattctcatcgatgagagcacccag
gccacggagcccgagtgcatggtgccagtggtgctcggggctaaacagctgattctggtg
ggtgatcattgtcagctgggtcctgtggtcatgtgtaagaaagcagctaaagcgggtctg
tctcagtccctgttcgagaggctggtggttttgggcatcagacccatccgtctgcaggtg
cagtatcgcatgcatccatcgctcagtgctttcccttccaacatcttctatgagggatcg
ctgcagaacggagtcactgccgctgatcgaatcaagaaaggctttgatttccagtggcct
cagccggataagcccatgttcttctacgtgactcagggtcaggaggagattgctagctct
ggcacgtcctacctcaacaggactgaagcagctaatgtggagaagatcaccacgcgtctg
ctaaaggccggagccaaaccggaccagatcggcatcatcacgccatatgagggccagcgc
tcgtaccttgtgcagtacatgcagtttagcggctcactccacaccaaactctaccaggag
gtggagatcgccagcgttgacgcctttcagggaagagagaaggacttcatcatcctgtct
tgcgtcagagctaatgaacatcagggcattggtttccttaatgatccacggcgtctcaat
gtggcactaaccagagccaggtacggtgtgatcattgtgggaaatcctaaggctctctcc
aaacagcctctctggaatcatctgctgaattattataaagagcagaaggtcctggtggag
gggccgctcaacaatctgagagagagtctcatgcagttcagtaaaccacgcaagcttgtc
aacaccatcaaccctggtgcccggttcatgagtactgccatgtatgatgcaagagaggcc
atgattcctggatcggtgtatgaccgcagtagcactggacgtccatctaatatgtacttc
cagacccacgaccaggttggaatgatcggaaccgggccgaacccaatgggttccctgaac
atccctatcccgttcaaccttgttatgccacccatgcctccgcccgggtacctgggccag
gtgaacggaccggctgcaggacgtggtgcacctaaaggcaagaccggaggtcgtggaggt
cgtcagagaaaccggggcacaggtaaccacgggagcgggcaggccaacatgccgagcagt
caggcgagtcaggatctggtatcacagccgttctctcagggtcctctgacccagggttac
atcactatgagccagccttcacagatgagccagcctggactgtcccagcctgagctctca
caggacagctatctgggtgatgaattcaagtcccagatggatgtggcgctctcccaggat
tccacctatcagggtgaacgggcttaccaacacggaggagtgacgggactctcacagtac
tag
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integrated database retrieval system
