KEGG   Paramisgurnus dabryanus (large-scale loach): 135745620
Entry
135745620         CDS       T10799                                 
Symbol
smu1a
Name
(RefSeq) WD40 repeat-containing protein SMU1 isoform X2
  KO
K13111  WD40 repeat-containing protein SMU1
Organism
pdab  Paramisgurnus dabryanus (large-scale loach)
Brite
KEGG Orthology (KO) [BR:pdab00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pdab03041]
    135745620 (smu1a)
Spliceosome [BR:pdab03041]
 Complex B
  Other components
   Complex B specific factors
    135745620 (smu1a)
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_EML_2 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40_WDHD1_1st WD40_Prp19 Beta-prop_TEP1_2nd Beta-prop_WDR3_2nd WD40_CDC20-Fz Beta-prop_WDR36-Utp21_2nd WDR55 WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_WDR36-Utp21_1st WD40_Gbeta ANAPC4_WD40 Beta-prop_WDR75_1st Beta-prop_EML LisH_TPL Beta-prop_WDR90_POC16_2nd NBCH_WD40 Beta-prop_ACSF4 Beta-prop_RIG_2nd Beta-prop_Nup120_160 Ge1_WD40 Beta-prop_TEP1_C Beta-prop_VPS8 WDR90_beta-prop_4th Beta-prop_Vps41 Beta-prop_Aladin Beta-prop_DCAF4 WD40_MABP1-WDR62_1st Beta-prop_NWD2_C Beta-prop_WDR41 Beta-prop_HPS5 Beta-prop_SPT8 Beta-prop_NUP159_NUP214 Beta-prop_IFT122_1st Beta-prop_IFT140_1st Beta-prop_WDR19_1st Beta-prop_SCAP Beta-prop_BBS7 Beta-prop_WDR35_TULP_N Beta-prop_EIPR1 WD40_RFWD3 DUF7165 Beta-prop_DCAF12 Beta-prop_IP5PC_F BBS2_Mid Beta-prop_WDR75_2nd TFIIIC_delta VPS8_N Beta-prop_NOL10_N DUF7899 LisH zf_topless LisH_PAC1
Other DBs
NCBI-GeneID: 135745620
NCBI-ProteinID: XP_065120034
LinkDB
Position
16:complement(33418950..33427951)
AA seq 513 aa
MSIEIESADVIRLIMQYLKENSLHRTLATLQEETTVSLNTVDSIESFVAEINSGHWDTVL
QAIQSLKLPDKTLIDLYEQVVLELIELRELGAARSLLRQTDPMIMLKQTQPERYIHLENL
LARSYFDPREAYPDGSSKEKRRAAIAQALAGEVSVVPPSRLMALLGQSLKWQQHQGLLPP
GMTIDLFRGKAAVKDVEEEKFPTQLTRHIKFGQKSHVECSRFSPDGQYLVTGSVDGFIEV
WNFTTGKIRKDLKYQSQDNFMIMDDAVLCMSFSRDTEMLATGAQDGKIKVWKIQSGQCLR
RYERAHSKGVTCLSFSKDSTQILSASFDQTIRIHGLKSGKCLKEFRGHSSFVNEATLTPD
GHHVISASSDGTVKVWNMKTTECTNTFKSLGTSAGTDITVNNVILLPKNPEHFVVCNRSN
TVVIMNMQGQIVRSFSSGKREGGDFVCCTLSPRGEWIYCVGEDFVLYCFSTVTGKLERTL
TVHEKDVIGIAHHPHQNLIATYSEDGLLKLWKP
NT seq 1542 nt   +upstreamnt  +downstreamnt
atgtccatcgaaatagagtcagcggacgtgatccgtctgatcatgcagtacctgaaggaa
aacagcttgcatcggacattagcaacactccaggaggagacaacagtgtcccttaacact
gtggacagtattgagagttttgtagccgaaattaacagcggtcattgggacactgtactt
caagctatacagtccctcaaactcccagacaagaccctaatcgacctttacgaacaggtg
gttcttgagctgattgaactgagagagttgggagctgccaggtctttgttgagacagaca
gatcccatgatcatgctgaaacaaacccaacctgagcgatacatccatctggagaatctt
ctggctcgctcgtactttgaccccagagaggcataccctgatggtagcagtaaggagaag
cgcagagcagccattgctcaggctctggccggtgaggtcagcgtggtgccgccctcacgt
ctgatggctctgctcggacagtctctaaagtggcagcagcaccagggtctcctgcctcct
ggtatgaccatcgacttgttcagaggtaaagcagccgtgaaggacgtagaggaggaaaag
ttccctacgcagctcaccagacatatcaagttcggtcagaagtctcacgtggagtgctcg
cgcttctctcctgacggtcagtatctggtcaccggttctgtggatggattcatcgaggtg
tggaatttcaccaccggaaagatcagaaaggatctgaagtatcagtcccaggataacttc
atgattatggacgatgccgtgctctgcatgtctttcagtcgagacactgagatgttggcc
acgggagctcaggatggaaaaattaaggtgtggaagatccagagcggccagtgtctgcgt
cgctatgagcgagctcacagtaaaggtgtcacctgtctcagcttcagtaaggacagcaca
cagatactatctgcttcctttgaccagaccatcaggattcacgggctgaaatcaggcaag
tgtttgaaagagtttagaggtcattcttcattcgtgaacgaagccacgcttactcctgac
ggacatcacgtcatcagcgcctcttctgatggaaccgtgaaggtatggaacatgaagacc
acggagtgcaccaacacgttcaaatctctggggacgtctgccggtacggacatcacggtt
aacaacgtgatcctgcttcctaaaaaccctgaacatttcgtggtttgtaaccgatccaac
actgtggtcatcatgaacatgcagggtcagattgtgaggagtttcagctctggtaaaaga
gaaggaggtgatttcgtgtgctgtaccctgtcaccacgtggagaatggatctactgtgta
ggagaggactttgtgctttactgcttcagcacggtcacaggaaaactcgagagaaccttg
actgttcatgagaaggacgtcatcggtatcgcccaccacccacatcaaaatttgattgcc
acatacagtgaggatggactgctcaaactctggaagccataa

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