Paramisgurnus dabryanus (large-scale loach): 135748368
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Entry
135748368 CDS
T10799
Symbol
ssrp1a
Name
(RefSeq) FACT complex subunit SSRP1a
KO
K09272
FACT complex subunit SSRP1/POB3
Organism
pdab Paramisgurnus dabryanus (large-scale loach)
Brite
KEGG Orthology (KO) [BR:
pdab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pdab03000
]
135748368 (ssrp1a)
03036 Chromosome and associated proteins [BR:
pdab03036
]
135748368 (ssrp1a)
Transcription factors [BR:
pdab03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG2-related
135748368 (ssrp1a)
Chromosome and associated proteins [BR:
pdab03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
FACT complex
135748368 (ssrp1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH1_SSRP1-like
SSrecog
Rttp106-like_middle
POB3_N
HMG_box
SSRP1_C
HMG_box_2
HMG_WDHD1
EphA2_TM
Motif
Other DBs
NCBI-GeneID:
135748368
NCBI-ProteinID:
XP_065122644
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Position
16:complement(13466835..13478580)
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AA seq
704 aa
AA seq
DB search
MGDTLEFNEIYQEVKGSWNDGRLRLSKQSVVYKSSKTGKVDNIPAPEISSANWRRVCLGH
GIKLSTSTGHIYKYDGFKETDFEKISAFFKANYKVELTEKDLCVKGWNWGTAKFSGPQLS
FEVGDNPAFEIPLNNVSQCATGKNEVTLEFHQNDDAEVSLMEVRFYVPPNTGDDGSDPVE
AFAQNILSKADVIQATGDAVCIFKELQCLTPRGRYDIRIYPSFLHLHGKTFDYKIPYTTV
LRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFTKDEDLSLTLNMNEDEVEKRFE
GKLSKNMSGPLYEIVSRVMKALVNRKITVPGNFQGHSGSQCITCAYKASSGLLYPLERGF
IYVHKPPVYLRFEEISCVNFARGTTTTRSFDFEIETKQNNQYIFSNIEREEYGKLFDFVN
AKKLNIKNRGIKESMKGTDGYSDSDEDKHDAYLERMKEEGKIREEADGSDESEGDSDESF
NPGEEEDEVPEEFDSNASESESEGEDGDSEDESKKKKPEKKPKKVVKEKKERKPRKEKKV
KDAGAPKRPMSAYMLWLNGNRERIKSEYPGISVTEISKKAGEMWKQLGKDRKEEWDKKAE
EAKRQYEKAMKEYKESGGGASAVPKEKKKKGGKVEAKKSGGEKEKKKEGGNESFKSKEFI
SSEESSSESDHDRGSKRKASDDDDDDEEEVASTPPSSEAESGSD
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgggagacactcttgagtttaacgagatctatcaagaggtgaagggatcttggaatgat
ggccggctgcggttaagtaagcagtctgtggtctataaaagcagtaagacagggaaggtg
gacaatattccagctccagaaatctcttcggctaattggcggcgtgtctgcctgggtcat
gggatcaaattgtccaccagcaccgggcacatttacaaatatgacggctttaaagaaaca
gattttgagaagatttctgcgttttttaaagcaaactacaaggttgagttgacagagaag
gatctatgtgtcaaaggctggaattgggggacggctaaattttcaggtccccagctgtcg
tttgaggttggtgacaatcctgcgtttgagatcccgctgaataacgtatcccagtgtgca
acaggaaagaatgaagtgacgttggagtttcatcagaacgatgatgctgaggtgtcgcta
atggaggtccgcttttacgtcccacccaacactggagacgatggttcagaccccgtagag
gcgtttgctcagaatattctgtcgaaggcagatgttatccaagccactggagatgctgtg
tgtatatttaaagagcttcagtgtcttacaccgagaggaaggtatgacatccgtatctac
cccagcttcctgcacctgcatggtaagacgtttgattataagatcccctacacaactgta
ctgcgtctcttcctgctgccacacaaggaccagaggcaaatgttttttgtgatcagtcta
gacccgcccattaaacagggtcagacacgttatcacttcctcatactcctcttcactaaa
gatgaagatctcagtctgactctcaacatgaacgaggatgaggtggagaaacgttttgaa
gggaagcttagtaagaacatgtccggtcctctctatgagattgtcagtcgggtcatgaag
gctctggtcaacagaaagatcacagtgcctggaaacttccagggacactcaggatctcag
tgtataacgtgtgcatataaggcgagctcagggctgttgtatccgctggagagaggcttt
atctatgtccacaagcctccggtttacctgcgcttcgaagagatctcctgtgtcaacttc
gctcgagggaccaccaccacccgctcctttgactttgaaatagagaccaaacaaaataac
caatacatcttcagcaacattgagagggaagaatacgggaaactttttgactttgtcaat
gccaagaagctgaacatcaagaatagaggaattaaagagagcatgaaaggcacagacggc
tacagcgattcagatgaggacaagcatgacgcgtacctggagagaatgaaagaagagggc
aagatcagagaagaggcggatggaagcgacgaatcggagggagatagcgatgagtctttc
aaccctggagaggaagaagatgaagtcccagaagagtttgacagtaacgcctcagagagt
gaaagtgagggtgaggatggagacagcgaggatgaaagcaagaagaagaaaccagaaaag
aagcccaagaaagtggtaaaggagaagaaagagagaaagccacggaaagagaagaaagtg
aaggacgcaggtgctcccaagaggccgatgagtgcttacatgctgtggcttaatggcaac
agagagcgaatcaagagcgagtatcctggtatctctgtgactgagatctcgaagaaggct
ggggagatgtggaaacaactgggaaaagatcggaaagaggagtgggataagaaagcagaa
gaggccaaaagacaatatgaaaaagccatgaaagagtataaagaaagcggtggtggagcg
tctgctgttccaaaagaaaagaaaaagaaaggagggaaggtggaagctaagaagagcgga
ggggaaaaggagaaaaagaaggaaggcgggaatgagagctttaagagcaaagagttcatc
tccagtgaagagagctcatctgaatctgaccacgacagaggcagcaagcgcaaggcttct
gatgatgatgatgatgatgaagaggaagtggcctccacaccaccaagctctgaggcggag
tcagggtctgactga
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