Paramisgurnus dabryanus (large-scale loach): 135749353
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Entry
135749353 CDS
T10799
Symbol
thoc1
Name
(RefSeq) THO complex subunit 1
KO
K12878
THO complex subunit 1
Organism
pdab Paramisgurnus dabryanus (large-scale loach)
Pathway
pdab03013
Nucleocytoplasmic transport
pdab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pdab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135749353 (thoc1)
09122 Translation
03013 Nucleocytoplasmic transport
135749353 (thoc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdab03019
]
135749353 (thoc1)
03041 Spliceosome [BR:
pdab03041
]
135749353 (thoc1)
Messenger RNA biogenesis [BR:
pdab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
135749353 (thoc1)
Spliceosome [BR:
pdab03041
]
Complex C
Other components
EJC/TREX
135749353 (thoc1)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
135749353 (thoc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Death
Motif
Other DBs
NCBI-GeneID:
135749353
NCBI-ProteinID:
XP_065124021
LinkDB
All DBs
Position
6:15728947..15737871
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AA seq
655 aa
AA seq
DB search
MSPPTLFNFTEARDKFTVATKSAVDIKNCKPLTTAFSHLPGNETEKKSTLDQALRGVLED
QIVTQKVNVEDFLSLIYISIDCVTEGICSATSPFLLLGDVLDCLPLDQCEKIFSFVEENV
ATWKSNTFYSAGKNYLLRMCNDLLRRLSKTQNTVFCGRIQLFLARLFPLSEKSGLNLQSQ
FNLDNITVFNKNEQESTLGLQHSEVKEDGMEVEEGEMGEEDAPAPCTIPIDYNLYRKFWT
LQDYFRNPLQCYDKFLWMTFLKYSDETLAVFKSYKLDDMQASKRKLEEMRTAAGDHVYFA
KFLTSEKLMDLQLSDSNFRRHILLQYLILFQYLKGQVKFKSSSCVLNDDQSLWIEDTTKL
VYQLLRETPPDGDKFASMVEHILNTEENWNSWKNEGCPSFVKERPAETKPIRPTKKRPAP
EDFLGKGPDRKIFMGNDELTRLWNLNSDNMEACKSDSREFMPSLEDFFEEAIVQADPTNM
VEDAYKVVRNSNYGWRALRLLSRRSPHFFQPTNQQFKSLAEYLENMVIKLAKELPKDIPS
EEIKTGEEDDDENGDNLLKESNDSPSIQSKGVTNSQMDEIAAKLGDQWKILGDHLEMSEK
EIRVIESDSEDVELQAKMLLVAWQDREGPQATMESLVTALNAAGFSNIADVLNET
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
atgtcgccgccgacactgttcaattttactgaagctagagataaatttacggttgccacc
aaaagtgctgtggatatcaaaaactgtaaacctctgaccaccgcttttagtcacctgcct
ggaaatgaaacagaaaagaaaagcactctggatcaggctcttcgtggagtccttgaagat
cagatagtaacgcagaaagtgaatgttgaggatttcctttctctgatctacataagtatt
gattgtgtgactgaaggcatctgctcagctacctctccatttcttctgctgggagatgtt
ctggactgtcttcctctggatcagtgtgaaaaaatattctcctttgttgaagaaaatgtt
gctacatggaagtctaatacgttttactcggctggaaaaaactacttgttaagaatgtgc
aatgatctcctcagaaggctctctaaaactcaaaatacagtgttttgtggacggattcag
ctgtttttagcacgtctctttcctttgtcagaaaaatcaggactgaacttacaaagtcag
tttaacctggataacatcactgtgttcaacaaaaatgaacaggagagcacacttggactg
cagcactcagaggtaaaagaggatgggatggaggtagaggaaggggagatgggcgaggaa
gatgcacctgcaccctgtaccattcccatcgactacaacctgtacagaaagttttggaca
ctacaggactactttagaaaccctctacaatgctacgacaaattcctatggatgacattc
cttaagtattcagatgagacactcgccgtgtttaagagctataaactagacgacatgcag
gcgtctaagagaaagctggaggagatgaggaccgctgcgggagatcacgtttacttcgcc
aagtttctcaccagtgagaagttgatggatcttcagttgagcgacagcaacttcagacga
cacattttgcttcagtacctcattctcttccagtacctcaagggccaggtcaagttcaag
agttccagttgcgttttgaatgatgatcagtctttgtggattgaggacacaaccaaactt
gtctatcagctactaagagaaacccctcctgacggtgacaagtttgcatctatggttgag
cacattctgaacacagaagaaaactggaactcttggaagaatgagggctgcccaagtttt
gtaaaagaaagacccgcagagaccaaacccatccggcctaccaaaaagagaccagcacca
gaggactttctgggaaaaggccctgatcgcaagatcttcatgggaaatgacgaactcaca
aggctttggaatctaaattcagacaacatggaggcctgcaagtctgacagcagggagttc
atgccgtcactggaggatttttttgaagaagccatcgtacaggccgatccaacaaacatg
gtggaggatgcgtacaaagtggtgcgcaactcaaactacggctggcgagccctgcggctg
ctatccaggaggagtcctcactttttccagcccaccaaccagcagttcaaaagtctggca
gaatatctggaaaacatggttatcaaactggccaaggagctacctaaggacattccatcc
gaggagataaaaactggagaggaagatgatgatgagaatggggataacttgttgaaagag
agcaatgacagtcccagcattcagagcaagggagtgaccaatagtcagatggatgagatt
gctgccaagctcggagaccagtggaagatactgggggaccatctggaaatgagcgagaag
gagattcgtgtaatagagtctgatagtgaggatgtggagctgcaggcaaagatgctgctg
gtggcctggcaagaccgtgaaggccctcaagctacgatggagagcctggtcacagccctt
aacgcagctggcttcagcaatatcgcagatgtcctcaatgaaacgtaa
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