Paramisgurnus dabryanus (large-scale loach): 135750362
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Entry
135750362 CDS
T10799
Symbol
rc3h1b
Name
(RefSeq) roquin-1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
pdab Paramisgurnus dabryanus (large-scale loach)
Brite
KEGG Orthology (KO) [BR:
pdab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pdab03000
]
135750362 (rc3h1b)
04121 Ubiquitin system [BR:
pdab04121
]
135750362 (rc3h1b)
Transcription factors [BR:
pdab03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
135750362 (rc3h1b)
Ubiquitin system [BR:
pdab04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
135750362 (rc3h1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-C3HC4_4
zf-C3HC4
zf-CCCH
zf-C3HC4_2
zf-CCCH_4
Prok-RING_4
zf_CCCH_4
FYVE
NS3_helicase_C
Baculo_IE-1
RING_XB3-XBAT31
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
135750362
NCBI-ProteinID:
XP_065125243
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All DBs
Position
6:complement(17818213..17835179)
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AA seq
1090 aa
AA seq
DB search
MPVQAPQWTEFLLCPICTQTFEETVRRPISLGCGHTVCKMCLNKLHRKACPFDQTAINTD
IEQLPVNSALLQLVGGQVPKQQPVALITCPEDTKHYEEARQCVEELALYLKPLSNARGVG
LSNAAQSMLSRPMQRKLVTLVHCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEGGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLEKGLVAVKTVVHGLVDFIQNHSKKGADTQQPPQHSKYKTYMCR
DMKQKGGCPRGASCTFAHSQEELEKYRKMNKRLAARLPCTPGLLPEDVVSLDPGRKSLTN
GIAGPLPQLIPRGTDPSNYELLLKPKMDANSLSAPGSPPDSAEHLPMPKQLPVVSRGAPQ
MYPQQQPELFYSEPPRHPPSGSQYDAQYPAGNPYPYQPPQYVSPRYIRNPPPPGESAVSP
YPEPYPGYGPERPYQSHHSGPPFSAHPYAPPSHYSRRHGHYPAPPPQFAPPRDDLVRMSP
VPLDVPPASMPPPQAGAAGSLYHSQESSSRDRYPQEGYYPTGPHPSQMRSHMRDPYSRSQ
PSLDDLHRRRKELLVQLEERKVISPPPFAASPTLPTHPFPNDYPQEYLEDGSKPFGSREP
EYAGQYSPWSCDTIGSYIGSKDAKPKDLSSAVQMMNAEGKVLREPPLDSQRRSAEAKDDD
PIIPFGPLPTVSPFGAISRTSKTGYQTTGPIQAMASSQASGSKHMTMTADYSYGNHSGWG
GAPYAQHQSMNTQGHFSERMPVSGPDREQLKIELQQVNQQISQQTRGMEAASNSMLLQRE
ACALASQPAAPVKWSTGAVVSSEQLSLELHHVEREIGKRTREIAMENQVAHEYKMKATEN
GQPDHKAQLEELSLALGEVSNGSSGMKPASGVGGSMLSLTNKTSSLTLCSADQSASSSDL
QKNGVVHSCS
NT seq
3273 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtacaagctccacaatggacagagtttttactgtgccccatatgcacccaaacg
ttcgaggagacggtgcgtcgacccatcagtcttggttgcggccacaccgtttgcaaaatg
tgcctcaacaagctgcaccgcaaggcctgtcccttcgaccagacggccatcaacactgac
attgagcagttgcccgtcaactctgccctgttacagctggtcggtggtcaggtgcccaaa
cagcaacctgtggcactcattacctgtccagaggacaccaagcattatgaggaggcacgg
caatgtgtggaggagcttgccctctacctcaaacccctcagcaatgcacgaggggtgggg
ttaagcaatgctgctcagagcatgctgagccgcccaatgcagaggaagctggtgactctg
gtgcactgtcagctggtggaagaggaaggtagggtcagggccatgcgggcggcccgttct
ctgggtgaaagaaccgttacagagctcatcctgcagcaccaaaacccccagcagctctca
tccaatctgtgggctgctgtcagagcaagaggctgccagttcctgggtccagccatgcag
gaagaggcactaaagctggtactgttggccttggaagatggatctgctctttccagaaag
gttctggttctctttgtggtccaaagacttgaaccaaggtttcctcaggcctctaaaacc
agtattggacatgtagttcagctcctctatcgtgcctcatgcttcaaggtgacaaagcga
gatgaggactcgtcactaatgcaattgaaagaggagttccgcacatatgaggcactgcgg
cgggagcacgactctcagattgttcagatcgccatggagggaggcctacgcatcgccccc
gatcagtggtcctctctgctttatggagatcagtcccacaagtcccacatgcaatctatt
attgacaagctgcagacgccagcatcgtttgctcagagcgtacaggagctgaccattgca
ctgcagaggacaggtgaccccgccaacctcaaccgactaagacctcacctcgagctgctc
gctaacatcgaccccagtccagatgctcctcctcctacttgggagcagctagagaagggg
ctggtagcagtaaagacggtggtccatgggctggtggatttcatccagaaccacagtaaa
aagggagctgacacgcagcagccaccccagcacagcaagtataaaacatacatgtgtaga
gacatgaagcaaaaaggaggctgtcccagaggagccagctgcacctttgcccactctcag
gaggagctggaaaagtaccgtaaaatgaacaaacgtcttgccgcaaggttgccctgcact
cctggtctgcttcctgaagatgtggtttcattagaccccggacggaagtcccttaccaat
ggaattgctggtcctcttccccagctcatccccagaggcacagatccctctaattatgaa
ctcttactcaaacccaagatggatgccaatagcctcagcgctcctgggtcaccacctgac
tcggcagagcacttacccatgcccaagcagttgccagttgtatccagaggtgctccacag
atgtatcctcaacagcaacctgagcttttctactcagagccacccagacatccaccctca
ggatctcaatatgatgctcaatatccagcaggcaacccctacccataccagcctccacag
tatgtatctccccgttacatccgtaacccacctccacctggcgagtcagcagtgtccccc
tacccagagccctaccctggttacggcccagagcgcccatatcagagccaccattcaggt
cctcctttctcagcccacccctacgcacctccctctcattacagccgcaggcatggacat
tatcctgcacccccacctcaatttgcacctccccgagatgacttggtgaggatgagccct
gttcctttggatgttcctccagcctctatgcctccacctcaagcaggggccgcaggatct
ctgtaccactcccaggagtcttcatcacgcgacagatacccacaagaggggtactatccc
actggaccacaccccagccaaatgagatcccacatgagagacccatacagtcgttctcag
cccagtctggatgatttgcaccgcaggcgtaaggagctgctggtccagctggaggagaga
aaagtcatctctcccccacccttcgctgcctccccaactctccccacacaccctttcccc
aacgactaccctcaggagtatttagaagatggctcaaaaccctttggaagtcgggagccg
gagtacgctgggcagtattccccctggtcatgtgatacaataggatcatacattggctcc
aaggatgctaaaccaaaagatctcagtagcgctgtgcagatgatgaacgcagagggaaag
gttctgcgtgagcctccgctagacagccagcgacgctccgcagaagccaaagatgacgat
cccatcattcctttcggccctttgcccacagtttccccctttggtgccatttcgcgcaca
tctaaaacgggttatcagaccactgggccaatacaggccatggcttcatcacaggcctca
ggctccaaacatatgacaatgacagccgactattcatatggaaaccacagcgggtggggc
ggagcgccgtacgctcagcaccagagcatgaacactcagggacacttcagcgagcgtatg
cccgtgtctggccctgaccgggagcagctcaagatagagctccagcaggtcaaccaacag
ataagtcagcagacccgtggcatggaggctgccagtaactccatgctcctgcagagggag
gcgtgtgcattggcgtcccagccagcagcaccagtgaaatggtctacaggtgccgtcgtg
tccagcgagcagctcagcctggaattgcatcacgtggagcgagagattggaaagaggacc
cgtgaaatcgccatggagaatcaggtggcacatgaatacaaaatgaaggccactgagaat
gggcagcctgaccataaagcccagctggaggaactctctttagcactgggtgaggtgtct
aatggatccagtggcatgaagccagccagtggggtgggtggatctatgctgtcgctgacc
aataagacgtcttctctcaccctctgctctgctgaccaatcagcaagtagctcagacctt
cagaagaatggtgttgttcactcttgctcttaa
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integrated database retrieval system
