Paramisgurnus dabryanus (large-scale loach): 135751812
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Entry
135751812 CDS
T10799
Symbol
trim71
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM71
KO
K12035
tripartite motif-containing protein 71 [EC:
2.3.2.27
]
Organism
pdab Paramisgurnus dabryanus (large-scale loach)
Brite
KEGG Orthology (KO) [BR:
pdab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdab03019
]
135751812 (trim71)
04121 Ubiquitin system [BR:
pdab04121
]
135751812 (trim71)
Enzymes [BR:
pdab01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
135751812 (trim71)
Messenger RNA biogenesis [BR:
pdab03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
135751812 (trim71)
Ubiquitin system [BR:
pdab04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
135751812 (trim71)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NHL
Filamin
DUF5128
zf-B_box
SGL
ANCHR-like_BBOX
zf-RING_5
zf-C3HC4
DUF5711
zf-RING_2
Ig_GEX2_N
Invasin_D3
DUF4094
BBP1_C
Motif
Other DBs
NCBI-GeneID:
135751812
NCBI-ProteinID:
XP_065126146
LinkDB
All DBs
Position
13:complement(25579247..25607576)
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AA seq
823 aa
AA seq
DB search
MSEVILWSSAQMASFPDSDLQTCPLCKELCGCSAPISSNSSTSSSSSQTSSSSSTSSTRR
LHVLPCLHAFCRQCLEGHRNPGDPLKLRCPTCDQKVSLSESGVDALPSSNFLFSNLLDVV
VSAEEQVKNGRSSVVHQGGLLRPQHLSDPQCSSCDEGNPATSHCLDCQEYLCDNCVRAHQ
RVRLTKDHFIEGLMESLHLANRANNSNTPVNLTQSFHNSFSMLNIFQERMDFCQQHDNAV
LRFYCDSCAVPICRECSLGRHAGHSFTYLQEALQDSRALTIQLLADAQQGRQAVQLSIEK
AQAIAEQVELKAKVVQSEVKTITLRHKKALEERECELLWKVEKIRQVKAKSLYLQVEKLH
QNLTKLDSTIATVTQVLEEGRSIDVLLAREHMLNQLQELKSLRCILQPQEDDRIMFTPPD
QALLIAIKSMGLISSGAFATASKAHGEGIKRALQGKMVSFTVVGYDHDGEPRMSGGDSVS
VVLMSPDGNLFSADVSDHQDGTYTVSYLPKSEGEHLLSVLICNQHIEGSPFKVMVKSGRS
YGGVGLPIASFGGEGDGDGQLCRPWGICVDKEGYVVVADRSNNRVQIFKPCGTFHHKFGT
LGSRPGQFDRPAGVACDSQRRIIVADKDNHRIQIFSFDGQFLLKFGEKGTKNGQFNYPWD
VAVNPEGKILVSDTRNHRVQLFGPDGTFLNKYGFEGALWKHFDSPRGVAFNQEGHLVVTD
FNNHRLLVIRPDCQSARFLGSEGTGNGQFLRPQGVAVDQEDRIIVADSRNHRIQVFEPNG
NFLCKFGTHGSGFGQMDRPSGIAVTPDGMIVAVDFGNNRILMF
NT seq
2472 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaagttatcctttggtcctctgcgcaaatggcgtctttcccagactccgacctg
caaacatgtccgctgtgcaaggagctgtgcggctgctctgctccgatctcctccaactca
tctacctcctcctcttcctctcagacctccagttcctcatctacctcatccaccaggaga
ctgcacgtcctgccttgtctgcacgccttttgcaggcaatgcctagagggccaccgaaac
cccggtgaccctctgaagctcagatgccccacgtgtgaccaaaaagtatctctgtccgaa
tcgggcgtcgacgccctcccctcctccaactttctcttcagcaacctgctggatgtggtg
gtgtccgccgaagagcaggtcaagaacggtcggtcttcggtggtccatcagggtggtctt
ctgagaccccagcacctctcggatcctcagtgcagttcttgtgatgagggtaaccccgct
acctcccactgcctggactgccaggagtacctgtgtgataactgcgtgcgcgcccaccag
agagtccggctcaccaaagatcacttcattgaggggctgatggaaagcttgcacctggcc
aaccgcgccaacaactcaaacacacctgtgaacctgacccagtccttccataacagcttt
tccatgctgaacattttccaggagaggatggacttttgtcagcaacatgacaacgcggtg
ctgcgtttttactgcgacagctgcgccgtgcccatctgtagagagtgcagcctgggcaga
cacgcgggtcacagtttcacctacctgcaagaagccctacaagactccagagctctgacc
atccagctgctcgccgacgcacagcagggcagacaagcagtgcagctgagcatcgagaaa
gcacaggccattgctgagcaagtggagttgaaggccaaggttgtgcagtcagaggtgaag
accatcactctccgtcataagaaagctctagaggaacgcgagtgtgagctgctctggaag
gtggaaaagatccgacaggtgaaggcaaagtcactttacctgcaggttgagaaactacac
cagaatctcaccaagctggatagcacaattgccacagtgacacaggtcctagaagagggg
cgcagcatagacgtcctgctagcacgcgagcacatgttaaatcagctgcaggagctcaaa
tccctccgttgcattctacaaccccaggaagacgatcgcatcatgttcactccaccggac
caggctctactaatagccatcaagtctatgggcctcatcagcagcggagcctttgccaca
gcttccaaagctcacggcgaaggcatcaagagagctctgcaaggaaagatggtttccttt
accgtggtagggtacgatcacgacggagagcctcggatgtctggcggtgacagcgtgtct
gttgtgctcatgagtccagatggtaatctcttcagcgctgatgtttctgaccaccaagat
gggacatacacagtcagctaccttcctaagagcgagggtgagcatttgctctctgtgctt
atatgtaatcagcacatcgagggaagtcccttcaaagtgatggtcaagtccggtcgcagt
tacggaggcgtgggcttgcccatcgctagttttggaggagaaggcgatggggatgggcaa
ctgtgtagaccttggggcatctgtgtggataaagaaggctacgtggtggtcgctgacaga
agcaacaaccgtgtgcagatcttcaaaccttgcggcacgttccaccacaagtttggcact
ttgggctctcgaccgggtcagtttgaccggcccgcgggtgttgcctgcgacagccagaga
agaatcattgtggcggataaggacaatcaccgcatccagatcttctcctttgacggccag
tttcttctcaagtttggcgagaagggcaccaagaatgggcagtttaactacccatgggat
gtagccgttaaccccgaggggaagatcctggtttcggatacacgcaaccaccgcgttcaa
ctcttcgggcctgatgggacattcctcaacaaatacgggttcgagggggccctctggaaa
catttcgattcaccccgtggtgtggccttcaatcaggaaggtcacctcgtggtgaccgat
ttcaacaatcatcgactgctagtcatcagacccgactgccagtcggctcgtttcctcggt
tcagagggtacggggaacggtcagttcttgcgcccgcaaggtgtagccgtggaccaggaa
gatcgaatcatcgtcgccgactcgcgcaaccatcgcattcaggtgttcgaacccaacggc
aactttttatgcaagtttgggactcacggtagtggcttcgggcagatggaccgcccctcg
ggtatagcggtaacccccgatggaatgattgtcgctgtggactttgggaataaccgaatc
ctcatgttctga
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