Paramisgurnus dabryanus (large-scale loach): 135752117
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Entry
135752117 CDS
T10799
Symbol
msh2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
pdab Paramisgurnus dabryanus (large-scale loach)
Pathway
pdab03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pdab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
135752117 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pdab03400
]
135752117 (msh2)
DNA repair and recombination proteins [BR:
pdab03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
135752117 (msh2)
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
AAA_27
Motif
Other DBs
NCBI-GeneID:
135752117
NCBI-ProteinID:
XP_065126558
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Position
1:53240499..53248582
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AA seq
938 aa
AA seq
DB search
MAVQPKQNLSMDSVSEKAFLNFYFSMPEKPDTTVRIFDRNDYYTVHGKDALFTAKEVFKT
NGVIKNLGAGDRKLESVVLNKMNFESFVRDLLLVRQYRVEVYRNNASKSSKDHDWQLSFK
ASPGNLTQFEDILFGSGVGPGEAAAGVVGVRLGTGSDGQRVVGVGYVDITLRKLGVCEFP
DNDQFSNLEALLVQIGPKECVLPGGDAGGDLGKLRQVVQRGGVLLTDRKKSEFTTKDIVQ
DLNRLLKGRKGETVSSAALPEMEKQIAMSCLEAVIKYLELLSDEGNFGTFKITTFDLNQY
MRLDNAAVQALNLFQGSSDDTTGTHSLAGLLNKCRTPQGQRLVNQWIKQPLRDKSKIDER
LDLVESFVDDSELRKSCQEDLLRRFPDLNRMAKKFQRQSSNLQDCYRVYQAVGQLPGLVL
ALERYSGKHQVLLHAAFISPLSDLINDFSKFQEMIETTLDMNQIDHHEFLVKPSFDPTLS
ELRENMDRLEKAMQAALSSAARELGLEGGKTVKLESNAQIGYFFRVTCKEEKSLRNNKKF
TTLDVQKNGVRFTNSKLSSLNEEYTKSKEEYEEAQNAIVKEIVSIAAGYVDPVQTLNEVI
AQLDAVVSFAVVAHAAPVPYVRPKILEKGSGRLILKEARHPIVEAQDDVAFIPNDVTFSR
GAEMFHIITGPNMGGKSTYIRQVGVIVLMAQIGCFVPCEEAELSVVDCILARVGAGDCQI
KGVSTFMAEMLETAAILRSATEDSLIIIDELGRGTSTYDGFGLAWAISEYIATRLKSFCL
FATHFHELTALAQQVPTVRNLHVTALTTDSTLTMLYKVKKGVCDQSFGIHVAELANFPKH
VIANAQAKALELEEFQEFSKAEEEGSDAGPEAKKRCLDRQEGEKMIEAFLAKVKALPADD
MTDDAVKEKLRKLRAEVRAKNNSFVNEILSHIAKVKHT
NT seq
2817 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcaacctaaacaaaatctgtccatggacagcgtttcagaaaaggcatttctg
aatttttatttttctatgcccgagaaacctgacaccaccgtgagaatatttgatcgaaac
gattactacacggtgcacggaaaagatgcgctttttacagcaaaggaggttttcaagacg
aatggggtcatcaaaaacctgggcgcaggcgacagaaagctggagagcgtggtcctcaat
aagatgaattttgaatcatttgtgagagacctgcttttggtcagacagtaccgagtggaa
gtttacagaaataatgccagtaaaagcagcaaagatcatgactggcaattatctttcaaa
gcatctcctggtaacctgacacagtttgaggacatcttatttggtagtggagtaggacca
ggggaggcagctgcgggtgtcgtgggggttcgtcttggcactggaagtgatggacaacgt
gtggtcggcgttgggtacgtggacattactctcaggaaacttggtgtgtgcgagttcccg
gataatgatcagttctccaatctggaggctttgctcgtgcagatcgggcctaaagagtgc
gtgcttcctggaggagatgcaggtggagaccttggcaaactcagacaggtggtacagcgt
ggaggtgttctgctcacagacagaaagaaatcggagttcacaaccaaagatattgtgcag
gacctgaatcgtttacttaaggggcgtaagggagagactgtgtccagtgctgcacttcca
gagatggagaagcagattgccatgtcttgcttagaagcagtcatcaaatacctggagctc
ctctcagatgagggtaacttcggtaccttcaagataacaacctttgatctgaaccagtac
atgcgtttggataatgctgctgtgcaagcactgaatctctttcagggttcatctgatgat
accacaggcactcattctctggcaggtcttttaaacaaatgccgtaccccacaaggacag
cggctggtcaaccagtggatcaaacagcctcttagagacaaaagcaaaatagatgaacga
ctggatcttgtggagagttttgtggatgactctgagctgaggaagagttgtcaagaagat
cttctccgacgttttccagacctaaaccggatggccaaaaagtttcagcgtcagagctct
aatttacaggactgttatcgtgtctaccaagctgttgggcagctaccgggactggtattg
gctttggagagatacagtggaaaacatcaggtcctcttgcatgcagcattcatctctccc
ctcagtgacctcatcaatgacttttccaaatttcaggagatgattgaaactacactagat
atgaaccagattgaccatcatgagtttctggtaaaaccttcatttgatcccactttaagt
gagctcagggagaacatggatcgtttggagaaagctatgcaggcagccttaagcagtgca
gctcgtgaacttgggttggaaggaggcaaaaccgtcaagctggagtccaatgctcagatc
ggttacttcttccgagtcacatgcaaagaagagaagagccttcgcaacaataagaaattt
acaactttagatgttcagaaaaatggagtgcgctttactaacagtaagctgagctctttg
aatgaggaatacactaagagcaaggaagaatatgaggaggctcagaacgccattgtcaaa
gaaatcgtcagcatcgccgctggttatgtggatccagtgcagaccttaaatgaggtgatc
gctcagctggatgcagtagtgagctttgctgtagtggcacatgctgccccggtgccttac
gtaaggcccaaaatactagagaaaggatcgggcagactcattctaaaggaggcaagacat
cctattgttgaagcccaggacgatgtggctttcattcccaatgatgtcactttttcgagg
ggtgcagagatgtttcatatcatcacaggtcccaacatgggcggcaagtccacttacatc
cgtcaagtaggcgtgattgtcttgatggcacagattgggtgctttgtgccatgtgaagag
gcagaattaagtgtggtggactgtatactcgctcgagtgggcgcaggggactgccagatc
aaaggagtgtccacttttatggctgaaatgctggagactgccgctattctccgatcagcc
acagaggattctctcattattattgatgaattgggcagaggcacatccacatacgatggc
ttcggtttggcctgggcaatctcagagtacatagccactcgcctcaagtctttctgcctg
tttgccacacacttccacgagctgacggcattggcgcaacaggtgcccactgtccgtaac
ctccacgttactgccttgaccacagacagcacactcacgatgctctacaaagtcaaaaag
ggtgtttgtgatcagagctttgggattcatgtggcagagctcgctaacttccccaagcat
gtgattgctaacgcacaggctaaggctttggagcttgaggagttccaggaattctccaaa
gctgaggaggaggggtcagatgctggacctgaagccaaaaaacgctgtcttgacagacag
gagggggagaagatgattgaggcttttctggctaaggttaaagcacttcctgctgatgac
atgactgatgatgctgtcaaagagaagctgcgcaagctgcgggcagaagtccgcgctaag
aacaatagctttgtcaatgaaatactgtcacacattgccaaagtcaaacatacttga
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