Paramisgurnus dabryanus (large-scale loach): 135752146
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Entry
135752146 CDS
T10799
Name
(RefSeq) polyadenylate-binding protein 1-like
KO
K13126
polyadenylate-binding protein
Organism
pdab Paramisgurnus dabryanus (large-scale loach)
Pathway
pdab03015
mRNA surveillance pathway
pdab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdab00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
135752146
09123 Folding, sorting and degradation
03018 RNA degradation
135752146
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdab03019
]
135752146
03041 Spliceosome [BR:
pdab03041
]
135752146
Messenger RNA biogenesis [BR:
pdab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
135752146
mRNA cycle factors
Stress granule specific factors
135752146
Spliceosome [BR:
pdab03041
]
Complex C
Other components
Complex C specific factors
135752146
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_MUD2_C
RBD_DEAH11
RRM_ACIN1
RRM_RdRP1_2
RRM_Nup35
Motif
Other DBs
NCBI-GeneID:
135752146
NCBI-ProteinID:
XP_065126604
LinkDB
All DBs
Position
13:complement(594305..597556)
Genome browser
AA seq
462 aa
AA seq
DB search
MNFDLMEGKPMRMMWCQRDPSLRKNGVGNIFVKNLEKSIPSEELLDIFSSFGSILSCKVA
CDENGSKGFGFVHFETHEAAENAINQLNGMFFNNQQVFVGHFKSRSEREAEMQAKAKNFT
NIYIKNFGTDLDDKTLNEMFRKFGPTLSARVMRDEKGNSRGFGFVSFETHSDAKRSVEEL
NGTEWKGRRVYVGRAQKKRERDVELKRWFEKMEQERLIRYQGVNLYVKNLNDSVDTELLH
KEFSPYGTITSCRVMKAGGRSRGFGFVCFSSPEEATKAITEMNGRIVASKPIYVALAQRK
KERQAHLIHQYMMRMACFQSQRLLLNPAVYHPDPTQSKYFMAPQNQTQYALCSYDAQPQS
SPQWDLSSVTDPQSNHTQAVWPAGPGFIHEVTSVNLQTSQCKYTPDVHHKFMSSAQQQWT
LQQMQPYVYTQGQESFTTQLYDTTSREDQNQMLGEMFYCSFS
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgaactttgacctgatggagggcaaaccaatgcggatgatgtggtgtcagcgtgaccca
tcactgcgcaaaaatggagtgggaaacatcttcgtaaagaacctggagaaatccatcccc
agtgaagaactactggatatcttctcatcctttggaagcattttatcctgcaaagtggct
tgtgatgaaaatggttcaaagggctttgggtttgtgcactttgagactcacgaagccgct
gaaaatgccatcaatcaattgaatgggatgtttttcaacaaccaacaagtgtttgttgga
cacttcaagtcccggagtgagcgtgaggctgaaatgcaggcgaaagccaaaaacttcaca
aacatttacatcaagaactttggaacagacctggatgataagacgctcaatgagatgttc
aggaaattcggtccgaccctgagtgcccgtgtgatgagagatgagaaaggaaactccaga
ggattcgggtttgtcagcttcgagactcacagtgatgcaaagaggtccgtagaggagctg
aatgggacggagtggaagggtaggcgggtgtacgtgggtcgagctcaaaagaaacgagag
cgtgatgtcgaactgaagcgctggtttgagaagatggagcaggagcgcttgattcgctat
cagggcgtcaatctgtacgtgaaaaatctgaacgacagtgtggacaccgaacttctccac
aaagaattctcaccatacgggaccatcaccagttgtagggtgatgaaagcaggtggacgc
agcagaggcttcgggttcgtttgcttctcgtctccagaggaagccactaaagccatcact
gaaatgaacggccgcatcgtcgcttccaagccaatatacgtcgctctcgcccagaggaag
aaggaacgtcaggctcacctcatccaccaatacatgatgagaatggcgtgcttccagagc
cagcgtttgctgctgaacccggccgtttaccatccagacccgacccaatcgaaatacttt
atggctccacagaatcaaactcaatacgccctttgtagttatgatgcacagcctcaatcc
agccctcagtgggatctgtccagtgtcacggaccctcagtccaatcacactcaggctgtc
tggccggccggtccaggtttcattcatgaagtgacttcagtgaatcttcagacatctcag
tgtaaatacacacctgatgtccatcacaaattcatgagctctgcacagcagcagtggact
ttacaacagatgcagccgtatgtctacacgcagggtcaagagtctttcacgacacaacta
tatgacacaacttctagagaagaccaaaatcagatgctaggagaaatgttttactgttca
ttcagctaa
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