Paramisgurnus dabryanus (large-scale loach): 135752187
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Entry
135752187 CDS
T10799
Symbol
pabpc1a
Name
(RefSeq) polyadenylate-binding protein 1A isoform X1
KO
K13126
polyadenylate-binding protein
Organism
pdab Paramisgurnus dabryanus (large-scale loach)
Pathway
pdab03015
mRNA surveillance pathway
pdab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdab00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
135752187 (pabpc1a)
09123 Folding, sorting and degradation
03018 RNA degradation
135752187 (pabpc1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdab03019
]
135752187 (pabpc1a)
03041 Spliceosome [BR:
pdab03041
]
135752187 (pabpc1a)
Messenger RNA biogenesis [BR:
pdab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
135752187 (pabpc1a)
mRNA cycle factors
Stress granule specific factors
135752187 (pabpc1a)
Spliceosome [BR:
pdab03041
]
Complex C
Other components
Complex C specific factors
135752187 (pabpc1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_10
RRM_Nup35
RRM_3
PABC_AtC3H46
POP1_C
Motif
Other DBs
NCBI-GeneID:
135752187
NCBI-ProteinID:
XP_065126664
LinkDB
All DBs
Position
13:complement(588490..593667)
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AA seq
632 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AEMGARAKEFTNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDDSGKSKGFGFVSFER
HEDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQGVNLYVKN
LDDGLDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTSQYMQRMATVRAVPNPVLNPYQPAPPSGYFMAAIPQAQNRA
AYYPTSQLAQLRPSPRWATQGVRPQHFQNMPNAIRPSAPRPQGFGTVRPNSSQVPRMIPS
QRMTSQAVGPRPSAAGAATGTAPVRGVPQYKYAPGVRNPQQHMPTQPQVPMQQPAVHVQG
QEPLTASMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLESPE
SLRSKVDEAVAVLQAHQAKEAAQKSVSGISAI
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atgaatcccagcgctcccagttacccgatggcctctctgtatgtgggtgatctccaccaa
gatgtaaccgaggccatgttgtacgagaagttcagcccggccgggcctattctatctatt
cgggtgtgcagggacatgatgacccgccgttctctgggttatgcctacgtgaacttccaa
cagcctgctgacgccgaacgcgcgttggacaccatgaactttgacgtcattaagggcaga
cctgtccggatcatgtggtcgcagcgtgacccctcactccgcaagagtggcgtgggtaac
attttcattaagaacttggacaaatccatcgacaacaaggcgctgtacgacactttctca
gcttttggaaacatcctgtcctgcaaggtggtttgcgatgagaatggctcaaaaggttat
ggctttgtgcactttgagacccacgaggctgctgaaagagccattgagaagatgaatggc
atgttgctgaatgaccgcaaagtgtttgtgggtcgcttcaagtcgcgcaaggagcgtgag
gcagagatgggagcccgggccaaagagttcaccaacgtttacatcaagaactttggagag
gacatggatgatgagaagctgaaggagatcttctgtaaatacggtccagcgctcagtatt
cgagttatgaccgacgacagcggcaaatctaaaggctttggctttgtcagctttgagcga
catgaggatgcccagagggctgttgatgagatgaacggtaaagagatgaacgggaagcag
gtgtatgtgggacgagctcagaagaagggagaacgtcagacagaactcaagcgtaaattc
gagcaaatgaagcaagaccgcatgacccgctatcagggagtcaatctctacgtgaaaaat
ctggatgacggcttggacgacgaacgtctgcgtaaagaattctccccattcggtaccatc
acaagtgcaaaggttatgatggagggaggcagaagcaaagggttcggattcgtttgcttc
tcttcacctgaagaagccacaaaggccgtgaccgaaatgaacggccgtattgtcgccaca
aagccgctgtatgtagctctggcccagcggaaggaggagcgacaggcccacctcaccagc
cagtatatgcagaggatggccaccgtcagagccgttccaaaccccgtcctcaacccctat
cagcctgcaccaccatctggatacttcatggctgctattccacaggctcagaatcgtgct
gcgtactatcccaccagccagctggcacagctccgccccagccctcgttgggcaacgcag
ggtgtccgcccacaacatttccagaacatgccaaacgctatcaggccttcagctccccgc
ccacaaggcttcggtaccgtccggcccaattcctcacaggttccacgcatgatcccctca
cagcgcatgacctcccaggcggtgggtccccgcccttcagctgcaggtgcagccacagga
accgctccagtgagaggcgtgccacagtacaaatatgcacctggagtccgcaacccacag
cagcacatgcccactcaaccacaggtccccatgcagcagcctgctgtccacgttcaaggt
caagaacctctaactgcatctatgttggctgccgccccaccacaggagcagaagcagatg
ctgggtgagcgtctgttccccctcattcagaacatgcatcccagtctggctggaaagatc
actggaatgctgctggagatcgacaactcggagctgctccacatgctggagtctccagag
tctctgcgctccaaggtggatgaagccgtcgctgtgttacaagctcatcaggccaaagaa
gctgcacagaaatcagtgagtggcattagtgctatataa
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