Paramisgurnus dabryanus (large-scale loach): 135753992
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Entry
135753992 CDS
T10799
Symbol
pcdh11
Name
(RefSeq) protocadherin-11 X-linked isoform X1
KO
K16498
protocadherin delta 1
Organism
pdab Paramisgurnus dabryanus (large-scale loach)
Pathway
pdab03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
pdab00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
135753992 (pcdh11)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pdab01009
]
135753992 (pcdh11)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pdab04515
]
135753992 (pcdh11)
Protein phosphatases and associated proteins [BR:
pdab01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
135753992 (pcdh11)
Cell adhesion molecules [BR:
pdab04515
]
Cadherins
Protocadherins
135753992 (pcdh11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
TMEM154
Prominin
DUF6249
Motif
Other DBs
NCBI-GeneID:
135753992
NCBI-ProteinID:
XP_065127786
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All DBs
Position
16:complement(16689029..16897775)
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AA seq
1242 aa
AA seq
DB search
MIMDLAIEAHVLVVLLTCLFLMCRAQERDYTVKEEQPENVRIGNLRKDLNLNLDPNIKLS
SALQFKPVYKTGDVPLVKVEASTGEIFTTSNRIDREKLCSGVFTEKRCFYEIEVAVLPDE
IFRLVKIRFLIEDINDNAPLFQSTVINISIPENTAINSRYPVPSAFDPDIGINGIQHYEL
VKSVSEFGLDIIETPEGDKWPQLIVQQSLDRELKDTFVMKIKVEDGGTPPKSSTAILQVT
VSDVNDNRPVFKDSEVEVNVPENAPMGTSVTHLHATDADLGSNAQIHFSFSNQISPATKR
HFAIDSTSGLITVKQPLDREVNPVHKLIVLASDGSSTPSRATVIVNVTDINDNVPSIDTR
YIMNLVNGTVLLSENAPLNTKIALITVTDRDADLNGKVTCYTDHDVPFRLKPVFNDQFLL
ETAALLDYETTREYAIRIVASDSGKPPLNTSAMVLIKIKDENDNAPIFPQPEIQLSIPEN
NDLKTQLIKISATDADSGSNALIIYSLGPDAPDGFNIDPRSGILSVVKRLDREKQEKYSF
TVIARDNGSAPLQSNVTVKLIVQDQNDNSPAFTHPEYNFYVPENLPLYGTVGLITVTDAD
ADDNAVVTLSIINGKDNFIIDPKTGVIKPNITFDREQQSSYTFVVKAVDAGLVQTTSYAQ
VTINVVDVNDNRPVFVIPSSNYSYDLVPSTTSPGSVVTRVFAIDNDTGMNAELQYSIIRG
SPRGLFAIDKTTGNITLQEKIVTADQGLHRLVVQVKDLGQPESLYAIALVHLFVNDTVTN
ATFIQEQLRKSLETPLDRNVGDNDVMPQTNGYVIVVIAIIAGTMTVILVIFVTALVRCRQ
TPRHKVVQKSKQSGEWVSPNQEGRQIKKKKKKKKRSPKSLLLNFVTIEEPKSDDPTHEHI
NGTLDLPVELEEQTMGKYNWATTPTTFKPDSPDLAKHYKSASPQPTFQIKPETPVAPKKH
HVIQELPLDNTFVVGCDSLSKCSSSSSDPYSVSECSCQGGFKAPGQIHTRQNQTPDKTFS
VVAATCPHKLIRFRSAHQILGCEQTQRRVTFHLPDGSQESCNDSGLGEPESNSGTITTHP
LPLGFPQDEYFEQTSPNSRTEGDGNSDPESTIEVNLQKALAEASETCTQECLILGHSDSC
WMPPALTQFQTSGAATLPSFGFQQSWMRGTMADGRHTLGRSVPKDDLDKGSNRPQFYNTL
DRHCSKKEDPVKVIPLASFSATSSPQTSVSGGSSAFMNEHQL
NT seq
3729 nt
NT seq
+upstream
nt +downstream
nt
atgattatggacttggcaattgaagcccatgttttggtggttttactcacctgcctcttc
ttgatgtgccgggctcaagagagggactatacggtaaaagaagagcagcctgaaaatgtc
cgcatcggaaaccttcgcaaagacctaaacttgaacctagatccaaacatcaaactgtct
tctgcgctgcagtttaaacccgtctacaagacgggcgacgtgcctttggtgaaagtagaa
gccagcacgggagagattttcaccacatccaaccgaatcgaccgtgagaagctctgctcc
ggagtcttcaccgagaaacgctgcttttacgagatcgaggtcgcagtgttacccgacgag
atttttcgtctggtcaagatccgtttcctcatcgaagacatcaatgacaacgcaccccta
ttccagtctacagtcatcaacatatccattcctgagaacacagccatcaacagccgttat
cccgtgccctctgcgtttgaccctgatataggaatcaatgggattcaacactatgagctt
gtcaagagtgtgagtgaattcggtctggacatcatcgagaccccggagggggacaaatgg
ccccaactcatagtccagcagagtctagatcgagagttgaaggacacctttgtgatgaaa
attaaagtagaggatggtggcacccctccaaagtccagcacagccattttacaggtcacc
gtttcggatgtgaacgacaatcggccagtattcaaggacagtgaagtggaggtaaatgtt
cccgagaatgccccaatgggaacgtctgtcactcaccttcacgccacagatgccgatctg
ggatccaatgctcagattcacttttccttcagcaaccaaatctcccctgccactaagcga
catttcgctattgacagcacatctggactgattactgtcaaacaaccgttggacagggaa
gttaacccggtccacaagctcatagtgttggccagtgatggaagctctactccttcaagg
gctacagtcatagtcaatgttacagacattaacgacaatgtcccctctatagatacacgt
tacataatgaatcttgtcaatggcactgtgctgttgtctgaaaatgcccccctcaacaca
aaaatagccctgattactgtgacagatcgagatgctgacctgaatgggaaagtaacttgc
tacacagatcacgatgtacctttcaggttgaagccggtcttcaatgaccagtttttgttg
gaaacggccgcacttttagattatgagaccactcgtgagtacgctattaggatagttgca
tctgattctgggaaacctccattgaacacttcagcgatggttcttattaaaatcaaggac
gagaatgacaatgctccgatttttcctcagccagaaatacagctgtcaattccggagaac
aatgaccttaaaacacagttgataaaaatcagtgcaacagatgcagacagtggttcaaat
gcccttattatttacagtcttggcccagatgctcctgatgggtttaacatagatccgcgg
tctggaatcctttctgttgtcaaaaggctggatagagaaaagcaagagaagtattcattt
acagtcattgccagggataatggttctgcccctcttcaaagcaatgtcactgtaaagctg
atagtccaggaccaaaatgacaacagcccagcttttacccatcccgagtacaacttttac
gtgcctgagaacctgcctttgtatgggacagtgggattgatcactgtaacggatgcagat
gctgatgacaacgcagtcgtcaccctctcaattattaatgggaaggacaattttatcatc
gaccccaaaactggggtgattaaaccaaacatcacattcgacagggagcaacagagttcc
tacacttttgttgtcaaggctgtggatgcgggattagtgcaaaccacctcatatgcccag
gtcaccataaatgttgttgatgtaaatgacaatcgaccagtgtttgtcatcccttcctcc
aactattcatatgatcttgttccttctaccaccagccctgggtctgtggtgaccagagtg
tttgctattgacaatgatactggaatgaatgctgagctgcagtatagtattattagaggg
tcgccgagaggattgtttgccattgacaaaactacaggcaacatcactctgcaagagaag
atagtaacagcagaccaaggtctccatagactagtggtacaagtcaaagacttaggacaa
cccgaatctttatatgcaatcgcccttgttcatttgtttgtgaatgacactgtcactaat
gctacattcatccaggagcagttacgcaagagtttggaaactcctttggaccgaaatgtt
ggtgacaacgatgtgatgcctcagaccaacggttatgtaattgttgttatcgccataatt
gctgggactatgacagtcatcctagtgatttttgtgacggctttagtgcgctgtcgacag
acgccaagacataaagttgtccagaagagcaaacagagtggcgagtgggtgtcgcccaac
caggagggtcgccagattaaaaagaaaaagaagaagaagaagaggtctccgaaaagtttg
ctgttaaattttgtcaccatcgaggaacccaagtctgacgaccctacccacgagcacatc
aacggcactctagaccttcctgttgaacttgaggagcagaccatgggaaagtacaactgg
gctaccacaccaacaacctttaaacccgacagccctgacttggccaagcactacaagtca
gcttctccacagccgacattccagatcaaaccagagacacccgtggctcccaagaagcat
cacgtcattcaggaactcccactagacaacacattcgtggtgggctgtgactcactctcc
aaatgttcctccagcagctctgacccctacagcgtttcagagtgcagctgtcaaggggga
ttcaaggcacctgggcaaatccacaccagacagaaccagaccccagacaaaacattctcc
gttgttgcagccacatgtccccataagctcatcagatttcgttctgctcatcagattcta
ggctgtgagcagacgcaacgccgcgtgacctttcacctgccagacggatctcaggagagc
tgcaacgacagcgggcttggagagccggagtccaacagcggcaccatcaccacccatcct
ctgcctctgggcttccctcaggacgagtactttgaacagacctcaccaaacagccgcacc
gagggtgacggaaactctgaccccgagtccactatcgaagtcaacctgcaaaaggctctc
gccgaggcttcggaaacctgcacccaggaatgtctgatcctgggtcattctgacagttgc
tggatgcctccagcgttgacccagttccaaacgtcaggtgccgccactctgccctcattc
ggttttcaacaaagctggatgcgggggaccatggctgatggacgccacaccctcggcagg
tcagtgcccaaagatgacctggacaaagggagcaaccggccccaattctacaacactctc
gacagacactgcagcaagaaagaggatcctgtaaaggtcatccctctagccagcttttcc
gctacgtccagcccccagacgtctgtgagtggaggttcctcggcttttatgaatgagcat
cagctgtag
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