Paramisgurnus dabryanus (large-scale loach): 135757042
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Entry
135757042 CDS
T10799
Symbol
upf3b
Name
(RefSeq) regulator of nonsense transcripts 3B
KO
K14328
regulator of nonsense transcripts 3
Organism
pdab Paramisgurnus dabryanus (large-scale loach)
Pathway
pdab03013
Nucleocytoplasmic transport
pdab03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pdab00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
135757042 (upf3b)
03015 mRNA surveillance pathway
135757042 (upf3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdab03019
]
135757042 (upf3b)
Messenger RNA biogenesis [BR:
pdab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
135757042 (upf3b)
mRNA cycle factors
P-body specific factors
135757042 (upf3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
135757042
NCBI-ProteinID:
XP_065128016
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All DBs
Position
16:complement(20574873..20579196)
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AA seq
454 aa
AA seq
DB search
MKEDKENTRPREKKLEIKYDENEKPEKPSKEKKEAMTKIVIRRLPPSLTKDELVEQLQPL
PELDYLEFFSSDTSLFPHLFARAYLNFKNQDDIVLFRDRFDGYVFIDSRGQEYPAIVEFA
PFQKVAKKRSKKKDAKSGTIEDDSDYKKFLEFYNGDEEKFPSNPETLLEEIEAKTKELSS
KKTTPLLDFLKNKQRIREEKKEERRRRELERKRLRDEERRKWREEDRRKRKEAEKLKKAE
KASYKDKDQSKEEQPKIKLLKKPEKAEDGDTEKPKEKPKKQREDRAPGGDMKKRQNGEHR
DEKGNKSEDAGHKDYRDRDGERERRQKEKERFRKQDEERRRRRERQDGENTYKKREDEGR
KEKERVWEKRKHENTGESSGNVHPEKSSKENKKEDSSRKDRMRNKDRPAIQLYQPGARSR
NRPGSGSGGAGGEGQAAERRADKEAKNTPEKAAE
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaggacaaagaaaacacgcgtcccagagaaaagaaactggaaataaagtatgat
gaaaatgaaaaaccagagaagcccagtaaagagaagaaggaggctatgacaaagattgtt
atccgacgtctccctcccagtctaactaaagacgaactagtggagcaacttcagcctctt
ccagaactggactaccttgagtttttctcaagtgatactagtctttttcctcatctattt
gcaagagcatatctgaatttcaaaaatcaagatgacattgttctcttcagagaccgtttt
gatggctatgtcttcattgatagtagaggacaagagtatccagccattgttgagtttgca
ccattccaaaaagttgctaagaaaaggagtaagaagaaggatgctaaaagtggaacaatt
gaagatgattctgattataagaagtttttggaattctacaatggcgatgaggaaaaattt
ccttccaatccagagactttacttgaggaaatagaggccaagacaaaagaactcagttct
aaaaagacaacccctctattggacttccttaagaataaacagagaataagagaggagaaa
aaagaagagaggagacggagggagctggaacgcaaacgtttgcgagatgaagagcgacgt
aagtggagagaggaggacagaagaaaaagaaaagaggctgagaaattaaaaaaggcggaa
aaggcatcttataaggataaagaccagtcaaaagaagaacagccaaaaatcaagctacta
aagaaaccagagaaagcagaagatggtgatactgagaagcctaaagagaagcctaagaaa
cagagggaagatcgagctcctggaggagatatgaagaaacgacagaatggtgaacacagg
gacgagaaaggcaacaaatcagaggatgctgggcataaagattacagggaccgtgatgga
gaaagagaaaggagacagaaagaaaaagaacgctttagaaaacaagacgaggagcggagg
aggagaagggaacgtcaggatggagaaaacacctacaaaaagagagaagatgagggaaga
aaggaaaaggaacgtgtttgggagaagagaaagcatgagaacactggagaatcatctggg
aatgttcatcctgaaaagtcatcaaaagaaaacaaaaaagaagacagttctagaaaagat
cgtatgagaaataaggatcgacccgcaattcaactgtaccagcctggggcgaggagccgt
aaccgaccaggaagcggcagcggaggagctggaggagagggacaggcagcagagaggagg
gctgataaagaggcgaagaatacaccagagaaagctgcggagtga
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