Paramisgurnus dabryanus (large-scale loach): 135758123
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Entry
135758123 CDS
T10799
Symbol
pcdh1b
Name
(RefSeq) protocadherin-1 isoform X1
KO
K16498
protocadherin delta 1
Organism
pdab Paramisgurnus dabryanus (large-scale loach)
Pathway
pdab03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
pdab00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
135758123 (pcdh1b)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pdab01009
]
135758123 (pcdh1b)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pdab04515
]
135758123 (pcdh1b)
Protein phosphatases and associated proteins [BR:
pdab01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
135758123 (pcdh1b)
Cell adhesion molecules [BR:
pdab04515
]
Cadherins
Protocadherins
135758123 (pcdh1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_4
Cadherin_CELSR2_9th
DUF7171
He_PIG
Motif
Other DBs
NCBI-GeneID:
135758123
NCBI-ProteinID:
XP_065129053
LinkDB
All DBs
Position
16:22952298..23124331
Genome browser
AA seq
1211 aa
AA seq
DB search
MMCQGAMWSQWSAMLLWIVFLLCCSTNLVNAIIYHVIEEQPPNTLIGSLASDQGLPDTGH
LYKLEVGAPYLRVDGKTGDIYTTETPIDRETLKDCRNLFEGDPCFLEFEVSITDLMKGTG
PRLIEGRIEIIDENDNTPQFASPVLSLSIPENTHVGALFSIPVASDKDSGSNGIADYALT
TGPEAANLFSLQVAQDSDEKLPQLIVLGNLDREQRDSYDLNIKVVDGGSPPRQSSALLRI
TITDANDNVPKFERSHYEGELPENSPPGHSVLQVKANDSDMGPNGEVTYTIHQASPTVQR
LFSIDHNTGIIFVKGKVDREEFSIHKFYVQAKDNGPQSKTSKALVTITVKDQNDNRPSIK
IRGIGLVTHEDGIANISEDMPVGTAVALVEVSDGDEGENAVVTCVVAGDVPFQLRSASET
SNDRKRKYFLQTTTVLDYERIKDYRIEIVAVDSGNPAMSSTNSLKVQVTDMNDNAPVFSP
TLYEVEFYEENQPGDKVVEVTATDADSGTNAELTYSITGGSVPEGLFEINPNNGEIRVMS
QLDREQLDHYQFLVAAADKGSPSLRGTATVVLKVLDRNDNDPKFMLNGYSFSVQENMPPL
SPVGMVTVNDYDEGENARIQLSVEPDNGKFMIQNGTNTILSTISFDREKESTYSFRLKAV
DGGDPPRSSYVGITINVLDENDNAPYVTRPSNSSYKFLDPRTSPETHVENVEAEDFDIGS
NSELEFSIIGGNPHALFRISPEGEITLAKEFTSKHIGLHRLVVKVKDKGTPPRHTTALVH
IYVNETIGNVSHVEGLVGHSLYTPLEMDIAGDPDYSRDLHNNMILGAVLGAFSVVILVIV
VAVVIRHVVLKENKSGYQAGKKETKDLYAPKPGPKSNKNKKAKKNKAPKPTNPTEEDEGG
TLQKGLKFNLMNESVTDSPRIHLPLNYPPGSPDLGRHYRSNSPLPSIQLQPQSPSASKKH
QAVQDLPATNTFVGTGDNNSTGSDQYSDYSYKANPPKYSTKQLPHRRVTFSTANQAQDLQ
DPSQHSYYDSGLEESETPSSKSSSGPRIGPLALPEDHYERTTPDGSIGEMEHPENDLRPL
PDVAMTGKCTRECTEYGHSDSCWMPGQPSPNRTKSHKSGPKLSTFVPYQEREGQERLMAD
SSSKPLGEERSGGGGNKVASIRFLPPYTSAYSAGGDGGKDCPLEEIPLSQTADYAPATTP
SSQGSKREIYL
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atgatgtgccagggtgcgatgtggtcacagtggagtgccatgctgctgtggattgtgttt
ctcctctgttgctctactaatctagtcaatgccatcatctaccatgtgatcgaggagcag
ccacccaacacgctaattggcagcctggcatctgaccaaggcctgccagacactgggcac
ctttacaagcttgaggtgggtgctccttacctccgcgtggatggcaaaacgggagatatc
tacaccacggagaccccgatcgatcgggagactcttaaggactgccgcaaccttttcgaa
ggggatccttgtttcctggaatttgaagtatctattacagacctgatgaaaggcacaggg
cctcggctaatcgaaggccgcatcgagatcatagacgagaacgacaacactccgcagttc
gcctcacccgtgttgtcattgtcgatcccggagaacacacacgtgggtgcgcttttctca
attccagtggccagcgacaaggattctggaagcaacggcatcgctgattatgcgctaacc
accggccctgaagccgcaaacctttttagccttcaggtggcacaagactcggatgagaaa
ttgccacagctgatcgtattgggtaatctagacagagagcaacgagattcatatgacctc
aacataaaggtggtcgatggtggatctccaccacgccagagcagtgccttgctcaggatc
accattacagatgccaatgacaatgtgcccaaatttgagagatcgcactatgagggtgag
ctgcccgaaaacagtccaccgggtcattctgttttacaagtgaaggccaatgactctgac
atgggccccaatggagaggtgacctacaccattcaccaggcatcacctacagtccaaagg
ctttttagcattgaccataacacaggaatcattttcgtcaaaggaaaggtggatcgtgaa
gaattcagcatacacaagttttacgtccaagctaaagacaacggtccccaatccaagacc
tcaaaggctcttgtgaccatcacagtgaaagaccagaacgacaacagaccttcaatcaag
atccggggcattggcctggtgacgcatgaagatggcatcgctaacatatcagaagacatg
ccagttggtacagctgtagctctggtggaggtgtctgatggggatgagggtgagaatgct
gttgtgacctgcgtggttgcaggggatgtaccattccagctacgttcagctagcgaaacg
tctaatgaccgcaagaggaagtacttccttcagacaaccacagtgctggactatgaacgg
atcaaagactacaggattgaaattgtagcagtggactctggcaaccctgcaatgtccagc
acaaactccctgaaggtgcaagtgaccgacatgaatgataacgctccggtcttctccccc
accttgtatgaggtcgaattttatgaagagaaccagccaggtgacaaggttgtggaggta
acagccacagatgcagacagtgggactaatgcagagttgacatacagtataactggtgga
tctgtccctgaggggctttttgaaattaaccctaacaacggagagatacgggtcatgagc
cagttggaccgtgaacagttagatcactatcagtttctagttgcagcagctgataaaggt
tcaccaagcttgagaggaacagccactgtagttcttaaggtgctagaccgaaatgacaat
gatccaaaatttatgctaaacggctatagcttttcagttcaagagaacatgccacccctt
agtcctgttggaatggtaacagtcaatgattatgacgaaggtgagaatgctcggattcaa
ctctctgtggaaccagacaatggcaagtttatgattcaaaatggaacaaacacgatcctt
tcaactatttcgtttgacagggagaaggaaagcacctacagtttcagacttaaagctgta
gatggaggtgatccaccacgttcctcttacgttggcattaccattaatgtgcttgatgag
aatgacaatgctccatatgtcaccaggccctctaactcctcatacaagttcttggatcct
cgaaccagcccggaaacacacgtagaaaacgttgaggcagaggactttgacattggttca
aattctgaactggagttcagtatcataggtggcaaccctcacgcattgttccgcatttct
ccagaaggtgagattacgttggctaaggagttcacatccaaacacataggtctgcatcgt
ttggtggtaaaggttaaagacaaaggcacaccaccacgccatacaactgcactggttcac
atctatgtaaatgaaacaatcggaaatgtctcacacgttgaaggacttgttgggcacagt
ctttatacaccccttgagatggacattgctggcgatcccgattattctcgagacctgcat
aataacatgatcttgggcgcggtcttgggcgccttttcggtcgtcattctagtcattgtt
gtagcagtggttatcaggcatgtagtgctgaaggagaataaaagtggttaccaggcgggt
aaaaaagagacaaaagacttatatgcccccaaaccaggacctaagagcaacaagaacaaa
aaggcaaagaaaaataaagctccaaagccaaccaacccaactgaagaggatgaaggagga
actcttcagaaaggcttaaaattcaacctcatgaatgagagcgtcaccgatagccccagg
attcatctgccactcaactaccctccaggaagcccagacctgggacgacactatcggtca
aattcacctctgccatccattcagctccaacctcagtcaccttctgcctcaaagaaacac
caggcagtgcaggatctgccagccaccaacacctttgtaggaaccggggataacaactcg
acgggctcagaccagtattcggattacagctacaaggccaaccctccaaaatacagcacc
aagcagctcccgcatcgccgagtgaccttctccacagccaatcaggcacaagatctgcag
gatccctctcaacacagttactacgacagtggtcttgaagagtcagagactcccagcagt
aagagttcttcagggccccgtatcgggcccctcgccctacccgaagaccactacgaacgc
accaccccagacggcagcatcggagagatggagcatcccgagaatgatctgaggcctcta
cctgacgtcgccatgacgggaaaatgtacgcgcgagtgtacggaatacggccactcggat
tcctgctggatgcctggacaaccttcacccaaccgtaccaagagtcacaagagtgggccg
aaactctccacctttgtgccttaccaggagagggagggtcaagagcgtttgatggccgac
agcagctccaagcctctgggagaagagcgaagtggaggtggggggaacaaagtggccagc
attcgctttttgccaccctacactagtgcctattccgcaggtggcgatggtggtaaggac
tgccccctggaggagatacccctgagtcagacagccgattacgcccctgctactacaccg
tctagccaaggttcaaaacgagaaatctacctgtga
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