Paramisgurnus dabryanus (large-scale loach): 135758576
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Entry
135758576 CDS
T10799
Symbol
prpf40a
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X2
KO
K12821
pre-mRNA-processing factor 40
Organism
pdab Paramisgurnus dabryanus (large-scale loach)
Pathway
pdab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pdab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135758576 (prpf40a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pdab03041
]
135758576 (prpf40a)
Spliceosome [BR:
pdab03041
]
Complex A
U1 snRNP components
U1 related factors
135758576 (prpf40a)
Complex B
135758576 (prpf40a)
SSDB
Ortholog
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GFIT
Motif
Pfam:
FF
FF_PRPF40A
WW
WW_TCERG1
FF_RHG35_4th
CEP164_N
Motif
Other DBs
NCBI-GeneID:
135758576
NCBI-ProteinID:
XP_065129185
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All DBs
Position
15:complement(36223732..36253921)
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AA seq
879 aa
AA seq
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MSSTDANSGPSQAPPFPGVPPSAIPPPFMGPPGIPPHFPPMGMPPMGQRPPSMTPMPPGI
MPPMMPPMGAPPLGQIPSMMPPMMPGMMLPPRMPAASVQPTGPPGVSPVEPAAPAAPGTT
STTSTESSPDEQPKKKSVWTEHKSLDGKTYYYNTETKQSTWEKPDELKSPAEQMLSKCPW
KEYKSDTGKPYYYNSQTKESRWTKPKELEDLEAMIKAEENGTADIVAPGTTTPALTTPIE
SSVVMAAVAETETAMATVTTEEQPALVPVQAAEVSNDVPVNSTEETAIIETLPSNDTSKE
ERPELVKKVYKWNTKEEAKQAFKELLKEKGVSSNASWEQAMKLIINDPRYSALPKLSEKK
QAFNAYKVQTEKEEKEEARIKYKESKETFQRFLENHEKMTSTTRYKKAEQMFNDQEVWSC
VPERDRLEIYEDVLFYLAKKEKEQAKQLRKRNWEALKNILDNMANVTYRTTWSEAQQYLL
DNPTFAEDEELQNMDKEDALICFEEHIRALEKEEEDEKQKTLLRERRRQRKNREAFQKFL
DELHDHGQLHSMSAWMEMYPTVSADIRFNNMLGQPGSTPLDLFKFYVEDLKARYHDEKRI
IKDILKDKGFLVEINTSFEDFGSVISSDKRATTLDAGNIKLAFNSLLEKAEAREREREKE
EARKMKRKEAAFKSMLKQATPPLEPETTWEGVRERFLKEPAFEDVTLESERKRIFKDFMH
VLEHECQHHHSKTKKHSKKSKKHHRKRSRSRSGSESEDDEYHSKKKKRSTSKSPSEHSSS
GESERSYKKSKKHKKKGKKRRHKSASPESDGDKERKGREKEKDKENDKSRGKTRGESKQK
SPKRKSTKEEARWDTSGSELSEGELEKRRRTLLEQLDAP
NT seq
2640 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcgactgatgctaatagtggccccagtcaagcaccaccttttcctggtgttcca
ccttcagcaataccaccaccctttatgggaccaccaggaatcccaccgcacttccctcca
atgggaatgccgcccatgggccagaggccacccagcatgacccctatgcctccaggaata
atgccccctatgatgcccccaatgggagcaccaccactgggacagataccttccatgatg
ccaccaatgatgccagggatgatgttgcccccccgtatgccagccgcatcagtacaacct
acaggaccgcctggtgtgagcccagtggaacccgcagctccagctgctcctggaactacg
agcaccacatcaactgagtcttcaccggacgaacagccgaaaaagaagtcagtgtggact
gagcacaaatcactggatggaaaaacatattactacaacacagagaccaaacaatccacc
tgggagaaacctgatgagctcaaatcacctgcagagcaaatgttgtccaagtgcccttgg
aaggagtataagtcggatacaggaaagccctactactacaactcacagaccaaagagtcc
cgctggaccaaacccaaagaactggaggatctagaagccatgatcaaagcagaggagaat
gggacggctgacatcgtggctcctgggaccaccacccctgctcttacaactccgatcgag
tcttctgttgtcatggctgcagttgctgagacagagactgccatggcgacagtcaccaca
gaggagcagccggctctcgtgcctgtgcaggctgctgaggttagcaatgatgtccctgta
aactccactgaggaaacggccattatagagacactacccagtaatgacacatctaaggag
gagagacctgagctggtgaagaaagtttacaagtggaacacaaaagaggaggcaaaacag
gcctttaaagaacttctgaaagaaaagggtgtttcctccaatgcatcatgggagcaggca
atgaagctcatcattaatgaccctcgttacagtgctctgcccaagctaagtgaaaagaaa
caggcatttaatgcttataaagtccagacagagaaagaggagaaagaagaagccagaatc
aaatacaaggagtctaaagagaccttccagcgcttccttgagaaccatgagaaaatgaca
tcaaccaccagatacaaaaaagcggagcagatgtttaatgaccaggaggtgtggtcatgt
gtcccagagagagacagactggagatctatgaggacgtgcttttttatctggccaagaaa
gaaaaggaacaagccaagcagttaagaaagaggaactgggaggcacttaagaacatatta
gacaatatggccaatgtcacgtacagaaccacctggtctgaggctcagcagtacctacta
gacaaccccacttttgctgaggatgaggagctacagaacatggataaggaggatgccctg
atctgttttgaggaacacatccgtgctcttgagaaagaggaggaagacgagaaacagaaa
actttactgcgagaacgacgcagacagcgcaagaacagagaagctttccagaaatttttg
gatgagcttcatgatcacgggcagctgcactccatgtcagcctggatggagatgtacccg
actgtcagcgctgatatccgcttcaataacatgttgggccagccaggttccacccctctg
gacttatttaaattttacgtggaggatctgaaagctcggtaccatgatgagaagagaatt
attaaagacatcctaaaggataaaggctttttggtggagatcaacacaagctttgaagat
ttcggctcagtgatcagctctgataaacgtgctaccacactggatgcaggaaacatcaaa
ctggcattcaacagcttacttgagaaggcagaagcacgggagagggagagagaaaaagag
gaggcaagaaagatgaagaggaaagaggcggcgtttaagagcatgctgaaacaggccaca
ccccctctggagccggaaaccacgtgggaaggagtacgagagcggttcctgaaggagcct
gcgtttgaggatgtcacactggagtccgagaggaagaggatatttaaagacttcatgcat
gttctagagcacgagtgtcaacatcatcattctaaaactaaaaaacactcaaagaaatcc
aagaaacaccacagaaaacgctccagatctcgatcgggttcggagtctgaggatgacgag
taccactccaagaagaagaaacgttcaacatctaaatctccatctgagcactcgtcctct
ggagaatctgagagaagttacaagaaatctaagaagcacaagaagaagggaaagaaaaga
cgacacaaatctgcctctccagagtctgatggagataaagaacgaaagggacgagaaaaa
gagaaggataaagaaaatgacaaatctagagggaagacgcgtggagaatccaaacagaaa
tctcccaaaagaaagagcacaaaagaggaggcaagatgggatacgtccggcagtgaacta
agtgaaggagagctagaaaagaggagacgtacccttttagaacagctggacgcaccgtag
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