Paramisgurnus dabryanus (large-scale loach): 135758714
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Entry
135758714 CDS
T10799
Symbol
upf2
Name
(RefSeq) regulator of nonsense transcripts 2
KO
K14327
regulator of nonsense transcripts 2
Organism
pdab Paramisgurnus dabryanus (large-scale loach)
Pathway
pdab03013
Nucleocytoplasmic transport
pdab03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pdab00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
135758714 (upf2)
03015 mRNA surveillance pathway
135758714 (upf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdab03019
]
135758714 (upf2)
Messenger RNA biogenesis [BR:
pdab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
135758714 (upf2)
mRNA cycle factors
P-body specific factors
135758714 (upf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
135758714
NCBI-ProteinID:
XP_065129408
LinkDB
All DBs
Position
1:complement(18084260..18095389)
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AA seq
1259 aa
AA seq
DB search
MPAERKKSVNMDEKEASNKDRDAERQAGTSREKSKDESKMSGKKDGGKTAEEKKRRAEEE
RKRKEEKEKKKKEEEKQKAEEEQRKKEEDEKRQQEEEEKRLLEEEAKRQKEEEAAQLKEK
EEAEQLHQEAWERHHSRKDLRVKNQHAQETRPEEAFFSRLDSSLKKNTAFVKKLRTLTEQ
QRASLSQDFNSLNLSKYIGEAVSSMVEAKLKISDVGCAVHLCSLFHQRYTDFAPLLLAAW
KRNFEARKEEKTPNVSKLRTDLRFIAELTVVGLFTDKEGLSLIYEQLKNIIGVDRETHTH
VSVIISFCKHCGDDVAGLVPRKVKNASEKFGLSFPPSQIISAEKQQPFQNLLREYFTSLT
KHLKKDHRELQNIERQNRRILHSKGELSEDRHKQYEEFATSYQKLLANTQTLADLLDENM
PELPQDKTVQEDHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENLVDLKAFVPAILFK
DNEKSSQSNKEEREGNSTEELEMELEALDITDDPLDLDVADETESEELAKKILDEQEQED
EEASTGSHLKLIVDAFIQQLPNCINRDLIDKAAMDFCMNMNTKSNRRKLVRALFTVPRQR
LDLLPFYSRLVATLHPCMSDVAEDLCSMLKGDFRFHIRKKDQINIETKNKTVRFIGELAK
FKMFSKTDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRSPDSHLRTSVLLDQMMRKK
QAQHLDVRYITMVENAYYYCNPPPMEKTVRRKRPPLQEYIRKLLYKDLSKVTTEKVLRQM
RKLPWHDSDSKGYLICCMVNIWNVKYNSIHCVANLLAGLVAYQEDVGIHVVDGMLEDIRL
GMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLFSFISFGVNADGSPSLLDPPEH
LFRIRLVCTLLDTCGQYFDRGSSKKKLDCFLIYFQRYVWWKKSLDVWTKDQPFPIDIEYM
ITDTLELLRPKMKLCSSLDEACAQVTQLEREFLIKLGLEKDGRSSSMMGENEALDEEDDD
DEDDGGAETEEQSGNESEMNDPEEEEGSENEEEEHEEEEENTDYLTDSNKENETDEENNE
VTIRGGGLKHVACAEDEDFIQALDKMMLENLQQRSGEAVKVHQLDVAIPLQLKSQLKKSP
APSCTAEADADISDTMPFVMLTRKGNKQQFKILNVPLSSHLAANHFNQQQAEQEERMRMK
KLTLDINERQEQEDYQEMMQSLAQRPAPANTNRERRPRYQHPKGAPNADLIFKTGGRRR
NT seq
3780 nt
NT seq
+upstream
nt +downstream
nt
atgcctgctgaacgtaaaaaatctgtaaacatggatgaaaaagaggcgagcaacaaggac
agggatgcagagagacaggctggcacatctcgcgagaagagtaaagacgagagcaaaatg
agcggaaagaaagacggaggaaagacggcggaagagaagaagagaagagcggaggaggag
aggaaaagaaaggaggagaaagagaagaagaagaaagaggaggagaagcagaaagccgag
gaggaacagagaaagaaagaggaagatgaaaagagacagcaggaggaggaggagaaaagg
ctgctggaggaagaagctaaacgacagaaagaggaggaggctgctcaactcaaggagaag
gaggaggctgagcaactccaccaggaggcgtgggaacggcaccacagcaggaaggacctc
cgtgtaaagaaccaacacgcacaagagacgcgtccagaggaggctttcttcagccggcta
gactccagtctgaagaagaacacagcgtttgtcaagaagctccgcacgctcacagagcag
cagcgcgcctccctctcgcaagacttcaactctctcaaccttagcaaatacatcggtgag
gccgtgagctccatggtagaggccaagctgaaaatctccgacgtgggctgcgctgtccac
ctctgctccctgttccaccaacgctacacggattttgctccgctgctgttggctgcctgg
aaaagaaacttcgaggccagaaaagaggagaagacgcccaacgtgagcaagctgcggacc
gacctgcgcttcatcgccgagctcaccgtcgtggggctgttcacggataaggagggtctc
tcgctcatctacgagcagttgaaaaacatcatcggtgtcgaccgagagacgcacacccac
gtgtccgtcatcatcagcttctgcaagcactgcggagatgacgtcgccggcctggtgccc
cggaaggtcaaaaacgcttcggagaagttcggcttgtcctttccgcccagtcagatcatc
agtgcagagaaacaacagccgttccagaacctgctgagggaatattttacctcgctcacc
aaacacctgaagaaagaccacagagaattacaaaacattgagagacagaacaggcgtatt
ctgcactccaaaggagagctcagtgaagaccgacacaagcagtatgaggagttcgccacc
tcctatcagaagcttttggcaaacacacagactctggctgatctactggatgagaatatg
cctgaacttcctcaagataaaactgtccaggaagaccacggtccaggcattgatatcttc
actccaggaaagccaggagagtatgacctggagggcgggatttgggaggatgaggatgct
cgtaacttctacgagaatctggttgatctgaaagcgtttgttcccgccattcttttcaaa
gacaatgagaagagcagtcagagcaacaaagaggagcgtgaggggaacagtacagaggag
ttggagatggagctggaggctctggacatcacggatgaccctttggatctggacgtagct
gatgagactgagagtgaagaactggcaaaaaaaatactggatgaacaagaacaagaggat
gaggaggccagcaccggctctcatctcaaactcattgtggatgcctttatccagcagctg
ccaaactgcatcaacagagacctaattgataaggccgcgatggacttctgtatgaacatg
aacacaaaatctaatcgcagaaagttggttcgggctctcttcactgttcccaggcaaagg
ctggatcttttgccgttttactctcgtctggtggccactctccacccgtgtatgtctgat
gtggcagaagatctctgctcgatgctcaaaggagatttccgcttccatatcagaaagaaa
gaccaaattaacatcgagaccaagaataagacggtgaggtttatcggggaattggccaaa
ttcaagatgttttccaaaaccgacacactgcactgtctcaagatgttgctgtctgatttc
tctcatcatcatatcgagatggcctgcacacttctggagacatgtggacgatttctgttc
cgctcaccagactctcacctgcgcaccagcgttttactggatcaaatgatgcgtaagaaa
caggctcagcatctggatgtgcgttacatcacgatggtcgagaacgcctattattactgt
aaccctccgccaatggagaagactgtccgcaggaagagaccgcccctgcaggagtatatc
cgcaagctcctctataaagatctgtcaaaggtcaccactgagaaagtgttaagacagatg
aggaagttaccgtggcatgactctgacagtaaaggttatcttatatgctgtatggtcaac
atttggaacgtcaaatataacagcatccactgtgtggccaatctgctggctggattagtg
gcctatcaggaggacgtaggcattcacgtggtggacggcatgctggaggacattcgcctc
ggcatggaggtaaaccagcccaagtttaaccagcggcgaatcagcagcgctaaatttctg
ggtgagctatacaactatcgcatggtggaatctgccgtcatcttccgaactctcttctcc
ttcatctcgttcggtgtgaacgctgacggttctccgagtcttctggatccccccgagcat
ctgttccgtatacgtctggtctgcaccctcctggacacctgtggtcagtactttgaccgt
ggatccagcaagaagaagcttgactgcttccttatctacttccagaggtacgtctggtgg
aagaaaagtttagacgtgtggactaaagaccagccattccccatcgatatcgagtacatg
atcacagacacactggagctactgcgacccaaaatgaagctgtgctcgtctctggatgaa
gcttgtgctcaggtcactcagctggagagagagttcctcattaaactgggtctggaaaaa
gacggccgctcctccagcatgatgggggagaacgaggctctggatgaagaggacgatgat
gatgaagatgacgggggtgcagagacagaggaacagtctggaaacgagagcgagatgaat
gaccctgaggaagaggagggctccgagaatgaggaagaggaacatgaggaggaagaggag
aacaccgactatctgacggactccaacaaagagaacgagacagacgaggagaacaacgag
gtgacaatccgcggtggcgggctcaaacacgtggcgtgtgcagaggatgaagattttatc
caggcgctggacaagatgatgctggaaaacttgcagcagcgcagtggagaggcagtgaag
gtccatcagctggatgtggcgattccactgcagttaaaaagtcagctgaagaaaagcccc
gccccctcctgtactgcagaggctgacgctgacataagtgacaccatgccgtttgtcatg
ctcacacggaaaggcaacaaacagcagtttaagatcctgaatgtgccgctatcgtctcat
ctggccgcaaatcacttcaaccagcagcaggccgagcaggaggagcgtatgcgaatgaag
aaactcacgctggacatcaatgagcgtcaggaacaggaggattatcaggagatgatgcag
tctctcgctcagaggccggcgcccgccaacacaaacagagagcgcagaccgcgataccag
catccgaaaggagcgccgaacgctgatcttatattcaagaccggtggcaggagacgctga
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