Paramisgurnus dabryanus (large-scale loach): 135758785
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Entry
135758785 CDS
T10799
Symbol
rtcb
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pdab Paramisgurnus dabryanus (large-scale loach)
Brite
KEGG Orthology (KO) [BR:
pdab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pdab03016
]
135758785 (rtcb)
Enzymes [BR:
pdab01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
135758785 (rtcb)
Transfer RNA biogenesis [BR:
pdab03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
135758785 (rtcb)
Prokaryotic type
tRNA splicing ligases
135758785 (rtcb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
135758785
NCBI-ProteinID:
XP_065129509
LinkDB
All DBs
Position
1:complement(18064439..18070401)
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AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLDKIHKNCWRIKKGFVPNMQVEGIFYVNEPLEKLMFEELRNACRGGGFG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMDNPDAVVSPGGVGFDI
NCGVRLLRTNLDEGDVQPVKEQLAQSLFDHIPVGVGSKGVIPMSAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPTKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYND
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMERAMKQDNITVNDRQLACARIMS
REGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFSKVFNTTPDDLDMHVIYDVSHNIAKVEE
HMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVDTCHDAGISRKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgctcttataacgatgaactgcagtatttggataaaatccataagaactgctgg
aggatcaagaaaggtttcgtaccaaacatgcaggttgaaggaattttctatgtaaatgag
cctctggagaagctgatgtttgaagagttgagaaacgcgtgtcgtggaggaggttttgga
ggatttctgcctgccatgaagcaaattggaaatgttgctgctctgccaggaattgtacat
aggtctattggattacctgatgttcactctggatatgggtttgctattggaaacatggct
gcgtttgacatggacaatccagacgcagtcgtctctcctggtggtgtggggttcgatatc
aactgcggcgttcgactgctgcggacaaacctagatgagggcgacgtgcagccggttaaa
gagcagcttgcacagtccttgtttgaccatattccggtcggggtcggatccaagggtgtc
attccgatgagtgcaaaagacctggaggaggctttggagatgggtgtggattggtcattg
agggagggatacgcctgggcagaggataaagaacactgtgaggaatacggcaggatgctg
caggccgatcctacaaaagtctcttccaaagctaagaagagaggcctgccacagttgggt
acactgggtgcaggaaatcactacgctgaaattcaggtggtagatgagatctataacgac
tatgcagcaaagaagatgggcatcgaccacaagggacaggtgtgcgtgatgatccacagc
ggcagtcgaggccttggccaccaggtggcgacagatgctctggttgccatggagagggcc
atgaagcaagataacatcaccgtaaatgatcgtcagctggcttgtgctcgcatcatgtcg
cgggaaggtcaggactatctgaagggaatggccgccgcgggcaactacgcctgggttaac
cgatcctcaatgacttttctcactcgtcaggccttctccaaagtgttcaacaccacaccg
gatgatctggacatgcacgtcatttacgacgtctcgcacaacatcgccaaggttgaggag
cacatggtggacggcaaacagaagactctactggtgcacaggaagggctcgacgagagcg
tttcctcctcatcacccgctcatacctgtcgactatcagttaaccggtcagccagttcta
attggaggaactatgggcacctgcagttacgtgttgacgggaacggagcagggcatgacc
gagaccttcggtaccacatgtcacggcgcgggtcgagcgctgtccagagccaaatccaga
aggaatctggacttccaggatgttctggataaactggcagacatgggaatcgccatcaga
gttgcatcacccaagcttgtgatggaggaggcaccggagtcctacaagaacgtcacagat
gtggtcgacacgtgtcacgatgcaggtatcagtaggaaggccatcaagctccgtcccatc
gctgtaattaaaggttga
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