Paramisgurnus dabryanus (large-scale loach): 135759017
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Entry
135759017 CDS
T10799
Symbol
ciita
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
pdab Paramisgurnus dabryanus (large-scale loach)
Brite
KEGG Orthology (KO) [BR:
pdab00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
pdab01001
]
135759017 (ciita)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
pdab04054
]
135759017 (ciita)
Enzymes [BR:
pdab01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
135759017 (ciita)
Protein kinases [BR:
pdab01001
]
Serine/threonine kinases: Other
TAF1 family
135759017 (ciita)
Pattern recognition receptors [BR:
pdab04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
135759017 (ciita)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
NLRC4_HD2
LRR_14
LRR_8
AAA_25
AAA_22
RsgA_GTPase
ABC_tran
nSTAND3
MMR_HSR1
AAA_lid_10
DUF87
AAA_29
nSTAND_NTPase5
Motif
Other DBs
NCBI-GeneID:
135759017
NCBI-ProteinID:
XP_065129901
LinkDB
All DBs
Position
3:complement(24405346..24421582)
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AA seq
1175 aa
AA seq
DB search
MSSCCAVMISFEDVLFQVRKAVQVGPSLLCELLKELHEAGVFSTEYYRSLFKQREVAEES
LGEILLNDGEDLARKLSLPIWQKWDISQVILDSALSKEEDLDSFLNDPDAESLDIFSDLL
PGDVFSKILDSILSEDSIEDILDPIFFEDDLDFQSGEADITCTLTPEIAAISDKKTKRKR
KEIRKTTSKSNKTTTKRRKVTASSESPPNGTSTITSEGNFHCNHSPLQPVIHVPLNSITA
FDSPPLFTPSGGSALQILQTLGSHHFIGSVVPLRPTYVIVSPQPVSPVTQIIPVSPTVGT
VAPPELTVAGHPVGSLSDSASKGLPSASVDTLSPTKVTSRTTAFSDGKPQNTDSPPPKPA
PKARPEAPKCVKDFILHAKSHIREICCRMRGGLGMESHYINMNLIQRKLLIKSGKNANKC
LEKELVVISDSERKRKKLDRSQVFHSNFSRPKQSIALLGKTGVGKSTMIQRLCLDWASGS
LPQFHFVFLLNCKNLDLTKSNYSLKHLLFDLSVTPRCEKSDAVFSHVLSFPEDVLIIFDS
FDDIKDFEGLLQSPAKSPRDTKYTIKQLFSGLFQKEILPGCTLLIATRPKEVLNQVLRKT
DSLLELCCFSPEDIELYTTKYFKDSPIQETALQKIKNERYIFTLCSNPLLCWTTCFLLEH
QESHDDSLPSTLTDFYLKVTSKHLQLAGGENSSLSSNKKKDILQLCKMAWEGFKNHNTHI
NLIDSAELVDYCLKSGILASHGPSDRPENHFGDLYTQNLLGGVHSVQSKQVNEKMLLAHS
VVQQKKRKVQGESQDLMQRFVTGLLFQKAPSGGVCILDGSIDVQAKRKAVETHLRNLKLN
EFTPARLLELFHCVYEANNTKFARVLLKNLPDNLSFCGTLLSPSDVYVICHLLQHAKALK
RTFSINLQDTCIPINGLRELVELECIKSFWAHTADTIALWEDLDQRKDELNLKGAIEKFT
LNPLKAKQGYHIENLPLLVHIHREKKLPSSEFVSALNEGVPALSHLQRLEFELGVLNGPE
VFPKLIEVLPSLQSLQHLDIEKNKIGDSGAKMLAGVLHFLKSLKFLNLSQNCIGDAGVER
LAKALVSVPSLQSLSLYGNLITDNGAEQLASVLPDMKLLQDLDVKFNKFTDIGAKKLSTA
LKSCNGMKSLELWNNCIPWGVFEHLHHQDPRIRSL
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atgagcagctgttgcgcagtcatgatttcttttgaagatgtactgtttcaggtgagaaaa
gctgtacaggttggccccagcctcctgtgtgaactcctcaaggagctgcatgaagccgga
gtcttctccacggagtactacaggtctctcttcaagcagcgtgaagttgcagaggaaagt
ctgggtgaaatcctattaaatgatggagaggatctggcaagaaaactctctttacctatt
tggcaaaagtgggatatcagccaagttattttggattcagcactgagcaaggaggaggat
ttagattcatttctgaacgatcctgatgctgaatcgttagacattttctccgatctttta
cctggcgatgttttctctaaaattcttgactccattctaagtgaagactctattgaagac
attttggatcccattttctttgaagatgatcttgattttcaatcaggtgaggcagacata
acctgcacactgacaccagagattgctgctatttcagacaaaaagacaaaaagaaaacga
aaagagataaggaaaacaacttccaaatccaacaaaactaccactaagcgcagaaaagta
acggccagctcagaaagtccccctaatggaacgtccaccattacttctgagggaaatttc
cattgcaaccacagccctttacagcctgtaatacacgtgcccctaaacagcataactgcc
tttgacagcccccctcttttcacccctagtggtggatctgcattgcagatactccagacc
ctcggttcccaccattttatcggctctgtggttccactgaggcccacatatgtgattgtg
tcacctcaacctgtaagtccagtgacgcaaataattcctgtttcaccaactgttggtacg
gttgctcctcccgaactcactgttgcggggcatccagtcggctcattatcagacagtgca
agcaagggcttgccatcagcatctgtagacactctctcccctacgaaagtgacaagtagg
accacagcgttttcagatggaaagccacaaaacactgattccccacctcctaaaccagct
ccaaaagcgcgtccggaagcaccaaaatgtgttaaggacttcattcttcatgcaaaatcc
catatcagagagatctgctgtcgtatgcgtgggggtttgggaatggagtcacactacatc
aacatgaatttgatccagaggaaactcctaatcaaatctggcaagaatgctaacaagtgt
ttggagaaggaactggttgtaatcagcgactcggagcgaaagagaaaaaaactggatagg
agtcaagtgtttcatagcaatttttccagaccaaaacagtccatagctctccttgggaaa
accggggtgggaaaatccaccatgattcagcgcttgtgtttagactgggcgagtgggagc
ctgcctcagtttcactttgtgtttttactgaactgtaaaaacttagaccttacaaaatct
aactacagcttaaagcacttactgttcgatttgtctgtaactcctcgttgcgagaaatcc
gatgctgtattcagtcatgttctctcctttcccgaagacgttctcattatttttgatagt
tttgatgacattaaagattttgaggggctccttcagtcccccgctaaatcacccagagac
actaaatacaccataaaacagctgttctcaggtctgttccagaaggaaattctgccgggc
tgcacgcttctcattgccacgagacctaaagaagttttaaatcaggtgctgcgaaaaact
gacagtcttttggagctttgttgcttctcccctgaggacatagagctctacacaactaaa
tatttcaaggactctcccattcaggagacggcactgcaaaaaattaagaacgaaagatac
atattcactttatgctccaatccactgctctgctggactacctgttttttgctggagcat
caagaaagccacgatgactctttgccttcaactctcacagacttttatctaaaagtgacc
tccaagcacctacagctggctggcggggaaaacagctcattatctagcaataaaaagaag
gacatccttcaattgtgcaaaatggcttgggaaggatttaagaatcataacacgcacata
aacctcatcgattctgcagaactggtggactactgtctcaagagtggcatactcgcgtcc
catggaccatcggaccgtccagaaaaccactttggagatctttacactcagaaccttcta
ggtggcgtgcactcggtgcagtctaaacaggtcaacgaaaaaatgctgctggcacatagt
gtggtccagcagaagaaacggaaagttcagggggagtcgcaggatttgatgcagaggttc
gtcacgggtctgctctttcagaaggctccttcgggtggagtttgtatcttggatggcagc
attgacgttcaggccaaaaggaaagctgtagaaacccatttgcgtaacctgaagcttaat
gaatttactcctgccaggttactcgaactctttcattgtgtttatgaggccaacaacacc
aaatttgcaagagtgctgttgaagaaccttccggacaatctgtcgttctgcggaacgctg
cttagcccgtcggatgtgtacgtcatatgccatcttcttcaacacgccaaggcattgaaa
cggaccttctccattaacctgcaagatacatgcattcctattaatggacttagagagttg
gtggagcttgaatgtataaaatctttctgggcacatacagcagacaccattgcattgtgg
gaggacttggatcaaagaaaagatgaattgaacttgaaaggtgccattgagaaattcacc
ttaaacccactgaaggcaaaacaagggtaccacatagagaacctgccacttcttgtccac
attcatagggagaagaagttaccaagcagtgaatttgtgtctgcgttaaatgaaggtgta
ccagccctcagtcatcttcagagactggaatttgagcttggagtcctgaatggtcctgaa
gttttccctaaactcatagaggtcctgccttctctgcagtcactacaacatctagacatt
gagaaaaacaaaattggcgactctggtgctaagatgctggcaggcgttctgcactttttg
aaatctttgaaatttttaaatctgtctcagaactgcattggagatgctggagtggagaga
ctggctaaagctctggtatcagttccttcattacagagcctcagcctgtatggaaatctg
attactgacaatggagctgaacagctagcctcggttttacccgatatgaaactgttgcag
gacctggatgttaagtttaacaagttcaccgacattggagctaaaaagctcagcactgct
ctgaaaagctgcaatggaatgaagtctttggagctgtggaataactgcattccatgggga
gtttttgaacatctccatcatcaagacccacggattagatcactttga
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integrated database retrieval system
