Paramisgurnus dabryanus (large-scale loach): 135767034
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Entry
135767034 CDS
T10799
Symbol
tnr
Name
(RefSeq) tenascin-R
KO
K06252
tenascin
Organism
pdab Paramisgurnus dabryanus (large-scale loach)
Pathway
pdab04510
Focal adhesion
pdab04512
ECM-receptor interaction
pdab04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
pdab00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
135767034 (tnr)
04518 Integrin signaling
135767034 (tnr)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
135767034 (tnr)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pdab00536
]
135767034 (tnr)
Glycosaminoglycan binding proteins [BR:
pdab00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
135767034 (tnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
Fibrinogen_C
EGF_TEN
EGF_Teneurin
FN3_DSCAM-DSCAML_C
Fn3_Dep-1_3rd
Pur_ac_phosph_N
EGF_Tenascin
EGF_2
Fn3_Dep-1_2nd
FN3_Tor_3rd
Interfer-bind
DUF7949
Motif
Other DBs
NCBI-GeneID:
135767034
NCBI-ProteinID:
XP_065132686
LinkDB
All DBs
Position
6:32105732..32324630
Genome browser
AA seq
1347 aa
AA seq
DB search
MWGLDMAMQGSMLSLALLFFGVQAVPNPTSKLVKTTRVRRQLPDDPSNQTQSMIFNHVYN
INVPLESLCSIDLDTIPGPGNKGNGEGDKFPTEYTEETVDSESQVTFTHRINIPKQACGC
PTITAIQQLANRIEMLEREVSVLRAHCSSGCCGESSVMGHLDFVPQCGGHGTFSMEICGC
VCEEGWTGKNCSEPRCPDDCSGQGICIEGECVCDRNFAGENCSEPRCPSDCSDRGLCIDG
ECVCEEAYAGEDCSQGRCLNDCSDQGTCVNGSCHCRPGFLGEDCSLIFCANNCSQKGVCK
DGFCACQEGYTGDDCASVSPPIHLRVQGVSEHTVDLEWEGSMILTDFLITYAPTTPGGVQ
LEIRVPGNVTNTTIKGLEPGLEYNINVYAVIDNIISAPMNTLVSTYLSNPDGLLFKSIME
TSVEVQWQPLDYLFDGWEISFIPKDNDGGMTAQLPSTITSFHQTGLKPGEEYTVNLVALK
DQGRSQPVTTTFVTLIDGPTQLIVRDVSDTVAFVEWTSPKAKVDKIILRYGLLGVDGPKT
TFRLPSTLSQYSLQVLRPGSTYEVSVSGIRNGNESEAIFTAFTTEIDAPKNVRVLSKTST
SLDLEWDNSEADVESYSVVYSTLAGDQYDKVFVPRNDGYTTKTTLTDLLPGTEYGIGISA
VLGANQSTPATMNARTDLDVPLDLTVTASTDNTITLLWGTVQGPIDHYRVTYTSSAGVTT
ELTVPKDITFTTLTGLEPATEYTITVAAQRGRQQSAAATIDAFTGFRPITQLYFSDVTSD
SLTVAWSAPAPPADAFILNYSVQDSSDDSEIALDGSKTKIALTGLLPSRRYTVSLVTMHG
NVSSEPVIGPVTTGMDPPRDLSVLYITEESATISWIQPLAPFDYYKMAYQSPKGRVDNVI
FDSDVTNYTLTNLHPATEYEIKLNAVKGSQESKIITTTVFTAMDMPAELTALNVTPQGAL
LRWNPPVSSVDNYVLTLTRNQVTADTFLVEGNKQEYQLSQLIPSTPYSVALYATKGPLTS
GTVIANFVTPMDAPHNLTASEINHRSALISWQPPIAEIDNYMLTYKAADGGRKELIFDSE
DTWIRLEGLAETTEYTVRLQAARGLETSAIVSTTFTTGNRLFPTPQNCAQHLLNGETLSG
IYSIYINRDLSQGVQVYCDMTTDGGGWIVFQRRQNGLTDFSRKWSDYKIGFGNLEDEFWL
GLDNIQRIAAQGRYELRIDMKDGQESVYANYDRFSIGDSKSLYKLRIGEYNGTAGDSLSY
HQSRPFSTQDKDNDVAVTNCALSYKGAWWYKNCHRANLNGKYGESRHSQGINWYHWKGHE
FSIPFVEMKMRPFNYRSISGKRRRSTH
NT seq
4044 nt
NT seq
+upstream
nt +downstream
nt
atgtgggggctcgacatggcgatgcaagggtcaatgctgagcctggctctgctgttcttt
ggtgttcaagctgttcctaaccccaccagcaaacttgtaaagaccacgagggtgagacga
cagcttccagatgaccctagcaaccagacccagtccatgatcttcaatcatgtatacaac
atcaatgtaccgcttgagtcactgtgctccatagacctggacacgataccaggcccaggg
aacaaaggtaacggcgagggtgacaagtttccaacggagtatacagaagagactgtggat
tcggaaagccaggtgacctttactcaccgcatcaacatcccgaagcaagcctgcggttgt
cccaccatcactgcaatacaacagctggccaaccgtatagagatgctggagcgtgaggtg
tcggtgcttcgggcgcattgtagctccgggtgttgtggcgagagctctgtcatgggtcac
ttggactttgtccctcagtgtggcggccatggcaccttcagcatggagatctgtggatgc
gtgtgtgaagaaggatggacgggcaagaactgctctgaaccacgctgcccagatgattgc
tccggccagggcatctgcatcgagggcgagtgtgtgtgcgaccgtaacttcgccggtgag
aactgttcagaacccagatgcccaagcgactgctccgacaggggtttgtgcatcgatggc
gagtgcgtttgtgaagaagcctatgctggtgaggactgctcacagggcaggtgtctgaac
gactgctccgatcagggaacctgcgtgaacggaagctgtcattgccgtccgggcttccta
ggagaggactgttctctcatcttctgtgccaataactgcagccagaaaggggtgtgcaag
gacggcttctgcgcctgtcaagagggatatacgggggatgactgtgcttcagtgtcacct
cctatacatctacgagttcaaggggtgtccgagcatactgttgatctggaatgggagggg
tctatgatcctgacagactttctcatcacttatgcccccacaacccctggtggagtccaa
ctggagatcagagtacctggaaacgttaccaacaccaccatcaaaggtttggagccagga
ctggagtacaacatcaacgtgtacgccgtcatcgacaacatcatcagtgcacctatgaac
accttagtatccacctatctctcgaatccagacggtttactcttcaaatcaatcatggag
acatccgtggaggttcagtggcaacctttagactacttgtttgatggctgggaaataagc
ttcattcccaaggacaatgatggagggatgacggcacagctacccagcaccatcacatcc
ttccaccaaacagggctgaagcctggggaggaatacactgtcaacctggtggcactgaaa
gaccagggcaggagtcagccggttactacaacttttgtcacactaattgatgggccaacc
cagcttatcgtacgagacgtctcagacacagtcgcgttcgtggagtggacctcacccaaa
gctaaagtggacaagatcatactgcgatacgggctgttgggtgtagatggaccaaaaacc
acctttcgtctgccgtcgactttaagccagtactcactgcaagtcctgaggcctggatcg
acatatgaagtatcggtcagtggaatccgaaatggcaatgaaagcgaagccattttcaca
gcatttactacagaaatcgatgcaccaaagaacgtgcgagtgttgtcgaaaacatccaca
agcttggacctggaatgggacaatagtgaagcagatgtagaaagctacagtgtggtttac
agcacactagctggagatcagtacgacaaggtcttcgtcccgcgcaatgacggttacacc
accaagaccaccctcactgatttactgcctggcacagaatatggcattggaatttcagct
gtacttggtgccaaccaaagcacaccagcaacaatgaatgcaagaacagatctggatgtc
cccttggatttgacggtcacagcctccacagacaacaccatcaccctgttgtggggcacg
gtgcaggggcctatcgaccattatagggtgacctacacctcctctgctggagttacgacc
gagcttacggtacccaaggacatcaccttcaccacactgacaggtctggagccggccacc
gaatataccatcacggttgcagcacagagaggcagacagcaaagtgcagccgccacaatt
gatgccttcacaggctttcgccctatcacacagctgtatttctctgatgtcacatctgat
tcattgactgtggcttggagtgcaccagccccgcctgctgatgcattcatcttgaactac
agtgtccaggactcgagtgatgattctgagatcgctctagacggctccaaaacaaaaatc
gccctcactggtcttctgccctccaggcgctataccgtttccttggtaaccatgcacggc
aatgtgtcctcagaaccggttataggtccagtcacaacaggaatggaccctccaagagac
ttgagtgtgttgtatatcacagaggagtctgcgaccatatcatggattcaaccgctcgca
ccttttgactactacaaaatggcttaccaatcaccaaaaggtagggtagacaatgtgatc
tttgacagcgatgtcaccaactacaccctgaccaacctccatccggccaccgagtatgag
atcaagctaaatgcagtgaaaggaagccaagaaagcaagatcatcaccacgactgtcttc
acagctatggacatgcctgcggagctgactgcattgaatgtcacacctcagggggctctg
ctgcgctggaaccctccggtctcaagtgttgataactatgtgctcaccctcaccaggaac
caggttactgcagacaccttcttggtggagggtaacaagcaggagtatcagctgagtcag
ctcatccccagcaccccatactcagtggccctctatgccactaaaggccctctcactagt
ggcaccgtcatcgccaactttgtcacacctatggacgcaccccataaccttactgccagt
gagatcaaccatcgaagtgccctcatatcttggcaaccgcccatcgctgagatcgacaac
tacatgctgacatacaaagctgcagacggcggtcgaaaggagctgatctttgattcagag
gatacatggattcgtcttgaggggctggcagagaccaccgaatataccgtgagactgcaa
gccgccagaggattagagaccagcgccattgtctccaccactttcacgacaggaaaccga
ttgtttcccacgccacagaactgtgcacagcacctgctaaatggagagaccctgagtggg
atctacagcatctacatcaacagagacctcagtcaaggtgtgcaggtttactgcgacatg
accaccgacggaggaggctggatagtgttccagcgacgtcagaacggcttgactgatttc
tccaggaagtggagtgactacaagattggctttggcaacctggaggatgagttctggctc
ggcctggacaacattcagaggatcgcagctcaaggacgttacgagctccgcatcgacatg
aaagacggccaggagtctgtatacgccaactacgacaggttttccatcggagactccaag
agcctctataaactaaggattggagaatacaatggcacagcaggtgactctctgagctac
catcagagcagacctttctctacccaggataaggacaatgacgttgctgtcaccaactgt
gctctgtcctacaagggagcctggtggtataaaaactgccatcgggctaaccttaatggc
aaatatggagagtccagacatagtcagggtattaactggtatcactggaaaggccacgag
ttttccatcccgttcgtggagatgaagatgaggccgttcaactaccgcagcatcagtggc
aagaggaggagatccactcattaa
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