Paramisgurnus dabryanus (large-scale loach): 135767046
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Entry
135767046 CDS
T10799
Symbol
smg7
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7 isoform X1
KO
K14409
protein SMG7
Organism
pdab Paramisgurnus dabryanus (large-scale loach)
Pathway
pdab03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pdab00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
135767046 (smg7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdab03019
]
135767046 (smg7)
Messenger RNA biogenesis [BR:
pdab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
135767046 (smg7)
mRNA cycle factors
Common to processing body (P body) and stress granule
135767046 (smg7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
TPR_2
Motif
Other DBs
NCBI-GeneID:
135767046
NCBI-ProteinID:
XP_065132706
LinkDB
All DBs
Position
6:32729684..32750505
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AA seq
1176 aa
AA seq
DB search
MNLCAQYLRQAEALKADMTDSKLGAAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDLW
NHAFKNQITTLQSQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRV
KSSQLGIISNKQSSTSAIVKPQPSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQL
VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEVK
TKWSVSDFIKAFIKFHGHVYLCKSLDKLNTLREKLEEQFQRLILQKAFSSQQLVHITVIN
LFELHHLRDFGNEGDEQSYSSDEQISWIQLLGLFMSFLGGMLSRALLNKNREEIMGECPL
PAIKVSLDWLRLRPSVFSESAVDKRQYIWPWLVSILNSFQPKEEDVSNASVIPLPEEFEL
QGFLALRPALRMLDFSKGHQGVVVGKENLLIHARHQRLVSLGKWVADNEPRLIQCRISDA
LVLFITDIPEMVVEEPQEKDTPVLQESSNGEQTPNDSTQGLKSVLSAGKNQNSGLDGSER
PVVTFKENIKPREQSREQNRNQHQRDAGKERAGFNKGNGTQGKNEQKKEGKRKSEVKKNS
HEKSTDAGKQVKTQTEMRKTPVSEARKTPVTQTPATSSQFIPIHHPGAFPPLPSRPGFAP
PAYVIPPPVAFSVSPGFTFPAGVSVPAPFLQTASHPQSANQVQPGKPSHIPYSQQRPSGP
GALNQGPPQSQQTQPPPPHQSQQALQQSVQLQVQQQQQQQQQQQQSPTKQSSQLGKSPPH
HHSMQQPYMQVPEQAGQMWNQHQNQPSMQKMPMQMPVKQPFFMPTQEPMNLFEHPMSMQP
PQPSMDKKMKFPEVKVQDFYWEPSYHIGGEGRGGMGDRMGKRQPGVFCPDQENMPRGPQY
EDNKSSPLLPPDLLKTLADFEEEEELLFTKPHDFYQALAGPLNSAPGRNIFLPNQSRLDS
GADVIGQSSLLPRFTIQESSYQNNSIFSEAYGKNMAPTSKPDAPMMHQEPSLYSLFEGTP
WSPSLPASSDHSTPASQSPHSSNPSSLPSSPPTHSHSSLPFSNFGPIGTPDSRDRRVTDR
WKTDKTGVSGFGLDYLPSASSTSSVPETNSWHQGAPTNSWAAQDMQMEDSSTVLLDSFKS
IWSSSMMQPGPSALEQLLMQQKQKQQRGHGNMNPPH
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgaacctctgcgcccaatacttacggcaggcagaggccctgaaggctgacatgacagat
tcaaagcttggtgcggcggaggtctggacgtcacgacaggctcttcaggacttgtaccag
aagatgctggttacggacctggagtacgccctggacaaaaaagtggaacaagatctctgg
aaccatgcttttaagaatcaaatcacaacactacagagtcaagctaaaaacagggccaac
ccaaatcgaagtgaagtgcaggccaatctctctctgtttcttgaggcagctagtggattc
tatacacaactgttgcaggagctgtgcacggtgtttaatgtggacctgccttgccgtgtg
aagtcatcacagcttggcatcatcagcaataagcaaagcagcaccagcgccatagtgaag
ccccagcccagctcctgttcctacatctgccaacactgtctggtccatcttggagatatt
gcacgataccgcaaccagacaagccaggctgagtcgtactacagacatgcagctcaactt
gttccctctaatggccaaccctacaatcaactggccatactggcttcctccaaaggagat
catctcacaacaatcttttactactgcaggagcattgctgtcaaattcccattccctgca
gcatccacaaacctgcagaaagctctttctaaggcgcttgagagccgggatgaggtaaaa
acaaaatggagcgtgtctgattttatcaaggccttcatcaagttccatgggcacgtttat
ctgtgcaaaagcctggacaagctcaacaccctgagagagaagctggaggaacagttccag
agactgattctccagaaagccttcagctcccagcagctggtccacatcacggtgatcaac
ctctttgaactgcaccatctccgggatttcggcaatgagggcgatgagcagagctacagc
tcggatgagcagatcagctggatccagcttcttggcctcttcatgtctttcctgggaggg
atgctaagccgggctttactaaataagaaccgagaggagatcatgggggagtgcccgctt
cctgccatcaaagtgtcattggattggttgaggcttcgacccagcgtattcagcgaaagt
gccgtagacaagcgacagtacatctggccgtggctggtgtccattctgaacagctttcag
cccaaggaggaggatgtgtcaaacgcatcagtaattcctttgcctgaagagtttgagctg
caaggctttctggcccttcggcctgctttacggatgctagacttctctaaaggacaccag
ggtgtcgttgttggcaaagagaacctgttgattcatgctcgacaccagagactcgtcagc
ctgggcaagtgggtggctgacaacgagccacggttgatccagtgtcgcatcagtgacgcc
ctcgtgctcttcatcactgatatccccgagatggtggtggaggagccacaggagaaagac
acacctgtactccaggagtcatctaacggagagcagacacccaacgacagcacccaaggc
ctaaaatctgtcctgtcagccgggaagaaccagaacagcggcctggatggcagcgaaaga
cccgtggtcacattcaaagagaacatcaaaccccgagagcagagcagagagcaaaacagg
aaccaacatcagagagatgctggaaaggagcgagccggatttaataaaggaaatggaaca
caagggaagaacgaacagaagaaagagggcaagaggaagagtgaggtgaagaagaacagt
cacgagaaatcaacagatgctgggaaacaggtgaagactcagactgagatgaggaagact
ccagtgtctgaagcgaggaagactccagtcacacagactccagccacatcttcccagttt
attcccattcaccacccaggagctttcccccctttgccaagcagaccaggttttgctcca
cctgcttatgtgattcctcctcctgtggcattctccgtgagcccaggcttcaccttccct
gcaggcgtctctgtgcccgccccttttctccaaactgcctcccatcctcagtctgccaat
caggtgcagcctgggaaaccttcacacattccctacagccagcagaggccttcaggccca
ggagccctaaaccagggtcctcctcaatctcaacagacgcaacctcctcctccgcatcaa
tcccagcaggccttgcaacagtctgttcagctacaagtacaacaacagcagcagcagcag
caacaacaacagcagtcgcccaccaagcagagctcacagctcggcaagagcccgccgcat
catcacagcatgcagcagccttacatgcaggtgcctgaacaggctggtcaaatgtggaac
cagcatcaaaatcagcccagcatgcagaaaatgcccatgcagatgccagtcaaacagcct
ttcttcatgcccacccaggagcccatgaacctcttcgaacatcccatgagcatgcagcct
cctcaacccagcatggacaagaagatgaagtttccagaggttaaagtgcaggatttctac
tgggagccttcgtaccacattggaggagagggcaggggtggaatgggcgacaggatgggc
aaacgtcaacctggagtcttctgtcctgaccaggagaatatgcccagaggccctcaatat
gaagacaacaagagctcccctcttctgcccccagacctgttaaagactctggcggacttt
gaggaggaggaggagcttctctttactaaacctcatgatttctaccaggccttggctggt
cctcttaactctgctccaggaagaaacatctttttgccaaatcagtcaagactggacagt
ggagctgatgtgatcggtcagtcctctcttctgccccgatttaccattcaggaaagctca
taccagaacaacagcattttcagtgaggcctacggtaaaaacatggcccctacatctaag
ccggatgctcccatgatgcaccaggagccctcgctttactccctctttgaaggaactcca
tggtccccttcacttcctgctagttcagatcactcaacaccagccagtcagtcccctcac
tcttccaacccaagcagtctgccttcatcccctcccacccatagccacagctccctgccc
ttctccaacttcggccccatcgggacaccagacagcagagaccgcagagtaacggaccgc
tggaaaactgacaagaccggtgtgagcggctttgggttggactacctgccttctgcttca
tccacttcttctgtgccagagaccaacagctggcaccagggggcgccaaccaacagttgg
gcagcccaggacatgcaaatggaggattcctctactgtcctccttgacagttttaagtca
atctggtcgagctccatgatgcagcccggtccgtccgcgttggagcagctcctgatgcag
cagaaacagaagcagcagcgcgggcacggcaacatgaacccgccacactga
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