Paramisgurnus dabryanus (large-scale loach): 135768607
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Entry
135768607 CDS
T10799
Symbol
ddx5
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
pdab Paramisgurnus dabryanus (large-scale loach)
Pathway
pdab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pdab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135768607 (ddx5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pdab03041
]
135768607 (ddx5)
03009 Ribosome biogenesis [BR:
pdab03009
]
135768607 (ddx5)
Enzymes [BR:
pdab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
135768607 (ddx5)
Spliceosome [BR:
pdab03041
]
Complex A
U1 snRNP components
U1 related factors
135768607 (ddx5)
Complex B
135768607 (ddx5)
Ribosome biogenesis [BR:
pdab03009
]
Eukaryotic type
Pre-60S particles
Helicases
135768607 (ddx5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
135768607
NCBI-ProteinID:
XP_065133959
LinkDB
All DBs
Position
3:18882347..18887899
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AA seq
613 aa
AA seq
DB search
MPGYSDRDRGGRDRGYSNGPPRFGGSRNGPPPGKKFGNPGDRLRKKHWNLDELPKFEKNF
YRENHDVGRRSIQEVDHYRRTKEITVKGRECPKPIVKFNEANFPNYVMDVINKQNWTEPT
PIQAQGWPVALSGKDMVGIAQTGSGKTLSYLLPAIVHINHQPFLEHGDGPICLVLAPTRE
LAQQVQQVAAEYGKASRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEVGKTN
LRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKEYV
QINVGALQLSANHNILQIVDVCNDGEKEDKLLRLLEEIMSEKENKTIIFVETKRRCDDLT
RRMRRDGWPAMGIHGDKSQQERDWVLNEFKYGKAPILIATDVASRGLDVEDVKFVINYDY
PNNSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQAHDLVSVLREANQAINPKLIQMAEDR
GGRSRGGRGGGFRDDRRDRHSGGRRDFNSYNQDNRNGDSYGQKKVFNSKPQNGSGSYNSS
NSFNQGYGNNGQSNFSGGQSGGYGNQSYQSQQFSANQGGVQNGMSHPPQFPFNPPQMPQS
MPPFPMPPPAFPQ
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgcccggatattcagacagagaccgcggtggccgtgacagaggttacagcaatggaccc
ccacgttttggaggcagcagaaatggacctcctccagggaagaagtttggcaatccaggt
gaccggctgaggaagaaacactggaacctggatgaacttcccaagtttgagaagaacttt
tacagggaaaaccatgacgtcggtcgacgatcaattcaagaagttgaccactacagaaga
actaaagagattacagtgaagggaagagaatgtcccaaacccattgtgaagttcaatgaa
gctaattttccaaactatgtaatggatgtcattaacaaacagaactggactgagccaact
cccatccaagcacagggttggccagtggcacttagtggtaaagacatggttggcattgca
cagaccggatctgggaaaacactttcatacttgctccctgctattgttcacatcaaccat
caaccattcctggagcacggagacggacccatttgtttggtgttagcccccacccgtgaa
ctggcacaacaagtccagcaggtggcggcagagtacggcaaagcttctcgtctcaaatcc
acctgtatctacggaggagctcccaaagggccacaaatccgggatctggagaggggagtt
gaaatctgtatcgccacacctggccgccttatcgatttcctggaggttggaaagacaaat
ctgcgcaggtgcacatatcttgtgctagatgaagccgacagaatgctggacatgggtttc
gaacctcagattagaaaaattgtggaccaaattaggcctgataggcagaccctgatgtgg
agcgctacatggccaaaagaggtgcggcagctggccgaagactttctcaaagagtatgtg
cagatcaacgttggtgctctacaactcagcgctaatcacaatatcctacagattgttgat
gtctgcaatgatggggaaaaagaggacaagctgttgcgtcttctggaggaaatcatgagc
gagaaggagaacaagactatcatttttgtagagaccaaaagaaggtgtgatgatctgacc
aggaggatgcgcagggatgggtggcctgcaatgggtatccatggagacaagagccagcag
gaaagagactgggtgcttaatgagtttaaatacggcaaagctcccatcctcattgccaca
gatgttgcctccagaggcctagatgttgaggatgtcaaatttgtcattaactatgactac
cccaacaattctgaggactacattcatcgtatcggccgaacggctcgaagccagaaaact
gggacagcctacactttctttacgcccaacaacatgaaacaggcacacgacctcgtctct
gtcctccgtgaggccaatcaagcaattaaccccaaactcatccagatggcagaagacaga
ggaggtcgttcgcggggaggtcgaggtggagggtttagagatgaccgccgcgatcgccac
tctggcggtaggcgggacttcaacagctacaaccaagacaaccgcaacggcgactcttac
ggacaaaagaaggtgtttaacagtaagcctcagaacggatctggaagttacaacagcagt
aacagttttaaccagggttacggtaataatggacagtcaaactttagcggcggccagtct
ggtggttacggtaatcaaagttaccaaagccagcagttcagcgccaaccaaggaggtgtt
cagaacggcatgagccaccctccacagttcccctttaaccccccacagatgccacagtcc
atgcccccctttcccatgcccccacctgcgttcccacagtaa
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