Paramisgurnus dabryanus (large-scale loach): 135770674
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Entry
135770674 CDS
T10799
Symbol
atg16l1
Name
(RefSeq) autophagy-related protein 16-1 isoform X1
KO
K17890
autophagy-related protein 16-1
Organism
pdab Paramisgurnus dabryanus (large-scale loach)
Pathway
pdab04136
Autophagy - other
pdab04140
Autophagy - animal
pdab04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
pdab00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
135770674 (atg16l1)
04136 Autophagy - other
135770674 (atg16l1)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
135770674 (atg16l1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pdab04131
]
135770674 (atg16l1)
03029 Mitochondrial biogenesis [BR:
pdab03029
]
135770674 (atg16l1)
Membrane trafficking [BR:
pdab04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
135770674 (atg16l1)
Others
Specific organelles associated proteins
Auto phagosome
135770674 (atg16l1)
Mitochondrial biogenesis [BR:
pdab03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
135770674 (atg16l1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
ATG16
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
EIF3I
WDR55
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
Beta-prop_RIG_2nd
Beta-prop_SCAP
ANAPC4_WD40
Beta-prop_DCAF4
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
eIF2A
Beta-prop_NWD2_C
Beta-prop_IFT140_1st
Ge1_WD40
Beta-prop_WDR19_1st
Beta-prop_DCAF12
Beta-prop_SPT8
Beta-prop_ELP1_1st
DUF6212
Leu_zip
NET2A
Lectin_N
Motif
Other DBs
NCBI-GeneID:
135770674
NCBI-ProteinID:
XP_065136435
LinkDB
All DBs
Position
8:complement(7011330..7029257)
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AA seq
620 aa
AA seq
DB search
MAGRRVECLWKRHVVEQLKQRDRVQRQAFEEIIHQYNRLLEKSDFQAVLSERLQTDKYEQ
HNRHDLSPGADGGRSDALQQEMAQMRIRHQEELTELHKKRGELAQNVIELNNQIQQKDKE
IQSNEAKMLEYQQQIAHLEGECCELRNSLTDLERANQTLRDEYDALQITFSALEEKLRKT
TEDNQELVTRWMAEKSQEANRLNAENEKDTRRRQAKLQKDLADAAKEPLPIEQDDDIEVL
SEEAPKETGDTSPSRQISRTPSKRTSQPLPAGLLDSISNIFGLSDSVHTGFVPSESRRRR
SVNSFGTSPEAAEAPSTCPEVRVPSTALHIFDAHDGEVNAVRFSPGSRLLATGGMDRRVK
LWEVISGHCEPKGALTGSNAGITSIEFDSAGTYLLAASNDFASRIWTVDDYRLRHTLTGH
SGKVLSARFLLDNTRIVSGSYDRTLKLWDLRSKVCMKTVFAGSSCNDIACTDQCVMSGHF
DKKIRFWDIRSESIVRELELLGRVTSLDLNHDRTDLLTCSRDDLVKIIDLRGNAVRQTFS
APSFKCGTDFTRVTFSPDGSYIAAGSVEGVLHIWNVLTGKLEKTLDKGHSTAINSVSWSP
SGAYVASVEKGSKGVLWSDM
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atggcaggacgcagagtcgagtgcttatggaaacgtcatgtcgtagagcagctgaagcaa
agagacagagttcagcggcaagccttcgaagagattatacatcaatataaccgtttgttg
gagaagtcagattttcaggctgtcctctctgaacgtctccagacagacaaatatgaacag
cacaacagacatgatctcagtccgggggctgatggtggtcgcagtgatgctctgcagcag
gaaatggctcagatgagaatcagacatcaagaggaactaacggagttacacaagaaacgt
ggagagttggcccagaatgtcattgaactaaataaccagattcagcagaaagataaggag
attcagagtaatgaagccaagatgttggagtaccagcagcagatcgctcatttggaaggc
gagtgttgtgaattgcgtaattctctcactgatctggaacgagccaatcagacgctgcga
gacgaatatgacgccctgcagatcactttcagtgctctggaggagaaactacggaaaaca
acggaggacaatcaggagctggtgacgcgctggatggctgagaaatctcaggaggcaaac
agactcaatgcagaaaacgagaaagacacaaggcgcagacaggccaaacttcagaaggac
ttagcagacgcagcaaaggagccgcttcccatagagcaagatgatgacatcgaagtgctc
tcagaggaggctcctaaggaaacaggtgatacgtcaccgagcagacagattagtcgcact
cccagtaaacggacgtctcagcctcttcctgccggactgctggactcaatcagtaatata
tttggcctgtctgattctgttcacactggtttcgtcccgtctgagtccagaagacgtcgt
tccgtgaattcatttgggacgtctcccgaggcagccgaagcaccgtcgacgtgccccgaa
gtccgtgtgccctccaccgccctgcacatctttgatgctcatgacggcgaagtaaacgcc
gtgaggttcagtcctggatctcgactgctcgccacaggaggaatggaccgcagagtcaaa
ctttgggaggtcatatcaggacactgtgaacccaaaggtgctctgaccggcagcaacgca
ggaatcaccagtatagagtttgacagtgcgggtacgtatctactggcagcatcgaatgat
tttgccagcagaatctggactgtcgatgactacagactgcggcacacgctcacaggacac
agtggaaaggttttgtctgcacgttttcttctcgacaacacccgaatcgtctccggcagt
tacgatcggacactgaagctctgggacttgcgcagtaaagtctgtatgaagacggtgttt
gccggctccagctgtaatgatatcgcctgcacagatcagtgcgtcatgagtggacacttc
gataagaaaattcgtttctgggacatcaggtcggagagtatcgtgcgtgagctggagctg
ctgggccgcgtgacgtctttagacctgaatcacgaccgcaccgatcttctcacctgttcc
cgcgatgacctggtgaaaataatcgatctgcgcggtaatgctgtacgacagacgtttagt
gctccaagttttaagtgtggaactgactttaccagagtaacttttagccctgatggcagt
tatatagcagcggggtcggtagaaggagttctgcacatttggaacgtcctaacaggaaaa
cttgagaaaactcttgataaaggtcacagtactgccataaattcggtctcctggtctccg
tcgggagcgtacgtggccagcgttgagaaaggcagcaagggtgtgctttggtctgatatg
tga
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