Paramisgurnus dabryanus (large-scale loach): 135770854
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Entry
135770854 CDS
T10799
Symbol
dhx16
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
pdab Paramisgurnus dabryanus (large-scale loach)
Pathway
pdab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pdab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135770854 (dhx16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pdab03041
]
135770854 (dhx16)
Enzymes [BR:
pdab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
135770854 (dhx16)
Spliceosome [BR:
pdab03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
135770854 (dhx16)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
DEAD
AAA_22
AAA_19
PWI
Cas3-like_C_2
AAA_30
Flavi_DEAD
nSTAND3
Motif
Other DBs
NCBI-GeneID:
135770854
NCBI-ProteinID:
XP_065136794
LinkDB
All DBs
Position
8:16722391..16736959
Genome browser
AA seq
1053 aa
AA seq
DB search
MASLEQWVSDQLHDILGLSDRYVAQFMIGLVKKSSGPQDFVTRLQQTGTIDIDQRITAFA
HELYNKAPKKHVVENPSRAIERHVMEMERKNKTYTLLDDSDSDGETTLNERGKEKKSKDR
DKGKKRKNIRQKQEESPSSDEEDTKKSSKDVDEPKKVAKEEEEEWEREERERIQDLEERD
AFAERVKLKDKDKTRHILERNDKKAYEEAQKRLKLDEEDRRKMLPELRKQSRRQYLTKRE
QEKLEDLEEEIKDEEYLFSTENLTETEKKDLDYKRKIRDLARDYKKAGVKEKEERKNRYY
MPEEKRSKTIPQKDMDLEFEETPREGGGEQGRWEEARVATATLQFGAREERERRIKEEKE
KYQLILEEEEMINFVSAAITMKGTLSEKESEPELSQAEKQQLSIQEVRRSLPIFPYREDL
LAAIRDHQILVIEGETGSGKTTQIPQYLLEDGYTEGGMKIGCTQPRRVAAMSVAARVAQE
MAVKLGNEVGYSIRFEDCTSERTILKYMTDGMLLREFLTEPDLASYSVVIIDEAHERTLH
TDILFGLIKDIARFRPNLKVLIASATLDTERFSCFFDDAPVFRIPGRRFPVDIFYTKAPE
ADYLEACVVSVLQIHVTQPPGDVLVFLTGQEEIEACCELLQERCRRLGSKISELLVLPIY
ANLPSDMQAKIFNPTPPGARKVVVATNIAETSLTIDGIIYVIDPGFCKQKSYNARTGMES
LIVTPCSRASANQRAGRAGRVAAGKCFRLYTAWAFKHEMEETTVPEIQRTNLGNVVLLLK
SLGINDLIHFDFMDPPPHETLVLALEQLYALGALNHLGELTKLGRRMAELPADPMLSKMI
LASEQYKCSEEVLTIAAMLSVNNSIFYRPKDKVVHADNARMNFVVPGGDHMVLLNVYTQW
VESGYSTQWCFENFIQFRSMKRARDVREQLEGLMDRIEVELCSANGDSMPIRKAVTAGYF
YHTARLSKGGYKTVKHQQTVYVHPNSSLFEEQPRWLIYHELVFTTKEFMRQVIEIDSGWL
LEVAPHYYKNKELEDSSTKKMPRKQGKAREELG
NT seq
3162 nt
NT seq
+upstream
nt +downstream
nt
atggccagtcttgaacagtgggttagtgatcagcttcatgacatccttggtttgagtgac
cggtatgtcgcccagttcatgatcggtctggtaaagaagtcctctggacctcaggacttc
gtgactcggcttcagcaaactggaaccattgacattgatcaaagaatcacagcgtttgca
catgagttgtacaacaaggctcccaaaaaacatgtggtggagaacccctcccgagccata
gaacgacatgtcatggaaatggagagaaagaacaaaacctacacgcttctggatgacagt
gatagtgatggagagaccactctcaatgaacgaggaaaagagaagaaaagcaaagacaga
gacaaaggaaagaaaaggaaaaatatcagacagaaacaagaggaaagtccatcatccgac
gaggaggacacaaagaagagttctaaggatgtggatgagccgaagaaagtcgctaaagaa
gaggaggaagaatgggaacgagaggaaagagagagaatccaggacctggaggagagggac
gcctttgctgagcgagtcaaattgaaagacaaagacaagaccagacacatacttgaaaga
aatgacaaaaaggcgtatgaggaagctcaaaaacgactaaagttggatgaagaagatcga
agaaagatgcttccagaattaaggaaacagtcacgtcggcagtacctgaccaaaagagaa
caggagaagcttgaagacctggaagaagagattaaggatgaagaatatctgttctccacc
gagaacctcaccgaaactgagaagaaagatctggattataaaaggaagatccgggacctg
gcccgagattataagaaagctggagtgaaagagaaagaggaaagaaaaaatcgatactac
atgcctgaagaaaaaagaagcaagactattccacaaaaagacatggacctggagttcgag
gagacacccagagagggaggcggggaacaaggtcggtgggaggaggcgagagtggccact
gccaccctgcagttcggggccagagaagagagggaacgcagaataaaggaggaaaaagaa
aagtaccagctcattctagaggaggaggagatgatcaactttgtcagcgctgctattacc
atgaagggaacgttatcagagaaggaaagtgaacccgagttatcacaagctgaaaaacag
cagctatccatccaagaggtcaggcgtagtctgcccatctttccttacagagaagatctt
ctcgctgccatcagggaccaccagatcttggtgatagagggcgagaccggatctggcaag
accacccagataccccagtatcttctggaagacggttacactgaaggaggaatgaagatc
ggttgcactcagcctcgacgagtggcggcaatgtcagtagcagccagagtcgcacaggaa
atggctgtcaaacttggaaatgaggtgggctacagcattcgttttgaggattgtacgtca
gaacgcaccatcctaaaatacatgacagatggcatgttgctcagagagtttcttacggag
cctgatcttgccagttacagtgtggtcatcatcgatgaagctcacgagcgaaccttacac
acagacatcctcttcggtctgatcaaagatatcgcccgcttccgtcccaacctgaaagtc
ctgatagccagcgcaaccttggacaccgaacgtttttcttgcttttttgatgatgcgcct
gtatttaggattccaggacgtagatttcccgtggacatcttctacacaaaggctccagaa
gcggattatttggaagcgtgtgtcgtgtctgtactgcagatccatgtcacccaaccgcct
ggagatgtgctggtgttcctcacggggcaggaggagattgaggcgtgctgtgagctttta
caggagagatgtaggagattgggttcgaagatatctgaactccttgttctgcccatctat
gccaacctcccctctgacatgcaggccaagattttcaatcccaccccacctggggcacgc
aaagtcgtggtggccacaaatatcgcagagacttctctcaccattgatggtattatttat
gtaattgatccaggcttctgcaaacagaaaagttacaatgctcgaaccgggatggagtct
ctcatcgtcactccttgttccagagcctctgccaatcagagagcaggtcgtgcaggaaga
gtggctgctgggaagtgttttcgactgtacacagcgtgggcttttaaacacgagatggag
gagaccacagtcccagagatccagagaacaaatctgggcaatgtggttttgttgctcaag
agtcttggcataaatgacctaattcactttgatttcatggatccgcctcctcatgagacg
ctggtcttggctctggagcagctttacgctttgggggccctcaaccacctcggcgagctc
actaagcttggccgaagaatggctgaacttcccgcagaccctatgctgagtaaaatgatt
cttgcctctgaacagtataaatgctctgaggaggtgctgactatcgcggccatgctgtca
gtcaacaactccatcttctaccgccccaaagacaaagtggttcatgctgacaatgcccgg
atgaacttcgtggtaccgggaggagatcacatggtgctgctcaatgtatacactcagtgg
gtggagagcggttactcaactcagtggtgcttcgagaactttattcagttccgctcgatg
aaaagagctcgggacgtccgtgaacagctagagggattgatggacaggattgaggtggaa
ctgtgcagcgccaatggcgacagcatgccaatccgcaaggcagtgacggctggatatttc
taccacacggcacgtttgagtaaagggggttacaaaacagtcaagcatcagcagacggtg
tacgtccatcccaacagctcactgtttgaggagcagccgcgctggctgatctaccatgag
ctggtcttcaccactaaagagttcatgagacaggtgatagaaattgacagcggctggttg
ctcgaagtggctcctcattattataagaataaagaattggaggacagcagcactaagaag
atgccacgcaagcaaggtaaagcccgtgaagaactgggctga
DBGET
integrated database retrieval system
