Paramisgurnus dabryanus (large-scale loach): 135770928
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Entry
135770928 CDS
T10799
Name
(RefSeq) protocadherin Fat 4 isoform X1
KO
K16669
protocadherin Fat 4
Organism
pdab Paramisgurnus dabryanus (large-scale loach)
Brite
Cell adhesion molecules [BR:
pdab04515
]
Cadherins
Cadherin related
135770928
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Laminin_G_2
Cadherin_CELSR2_9th
Laminin_G_1
Cadherin_2
EGF
Cadherin_4
EGF_TEN
hEGF
EGF_CA
Ig_Shg
Motif
Other DBs
NCBI-GeneID:
135770928
NCBI-ProteinID:
XP_065136932
LinkDB
All DBs
Position
8:18998863..19018091
Genome browser
AA seq
3001 aa
AA seq
DB search
MDTFGLINLCAFLLHSAIFFRFAVSDVCCISSSGKLWVHSNEKLFNVSMSKPGITPLRNR
RFTQLSFSKSVYSFEVREDTPPGTIVGHVEVLYDEELAKSVYSVLEDDGDGLFLLDPHSG
KFLLSRAVDFEMERYYILTVAAQQGDGQLNRVRVYFNVIDVNDNPPVFSQNTFLVSVLED
SPVGMCFLTLNVSDADDGIYGKVDLVVTSEDPECKFSINQHGALCLKGDLDRERVSTHSL
LVHASDRALPPDVRLTTSAQVTIYILDVNDNPPLITTPHTVIFPEDAPLNSVVTVVQATD
ADSGLNAEIVFSLKNPTEDTFSINSSTGVMYLQRLLDRELNDAITVTVKVKDKGVPQLFS
SFNLTVLIEDVNDHNPEFTQSSYNLTIYEDVPRGASLLRVHASDQDIGLNGDVRFYISEK
GFMIDSVLGVLSVMDEMDREKKAFYSFPVTAVDQGHVQRSATATINITIVDVNDCVPSFS
SESLTLHVLENGEDSTQNIHQIYAVDDDLDVNSLLTYSIESGNEEGLFLLHLNGTFHILE
NLDRESKSQHMLKVIAVDSGFPSLTGTGTLIIIVDDVNDNIPVFDEDTFDTRVSEDASVE
TVFGRVSASDIDDGSNTPLRYYLDGSDVPLSINETSGELFTISALDREVVASYRFFVFVT
DGHPTRMLSSSAAVSVTVEDVNDHTPAFLYGPYVANVPAGIAKGSVVCSVMAEDADDGLN
AKIKFSLHGRYAHLFSINFLTGTVFTADSVKRRNDITVDVHVQDGADDPKIDTTTLTVRF
QNDSYFPYIAVQVYKAFLSEDEPTGTLVAYVTAETARNLPVSFYLASGNFGEAFELHHST
GELTVKNPLDFETDVYFHLIVEARDSGMPPYSSYAEINFNISDVNDNPPVFSQKIYRCEV
HENLAARKVCDIIATDADSGVFGKVKYFILAGNIEGAFKIDMNHGTLTTTKRLDREKIPH
YNLTVKAVDEDKVSFSAIAKVIITVLDVNDHAPRFSQIFITEVPEDAPVGFSIIQITATD
DDVGVNAVIEYTILNSQNKNFPFSIDKASGIIILAHQLDREDQDLYIVKVNANDSAWSVS
TDVTFDITDVNDNTPFFTQPLYSITVPEMNDHEVFLLQVSATDQDLNQNAQILYFIDPPN
EHFFVNASTGDILTKQPVSLYESDSLILSFTVVASDCGSVPLNSSTLVSVTFVLYNRFPP
LFLSIRPLVPVPLNMEVGTEVILLSAIDQDSLEMNNSIEYFNSGGNGSLYFQVEHNSGRV
LVNKTLKNSLNSILSLQVTAKDKGYPPLSTQNEISFTVTGENLFSPYFPDSKVQFFVPED
LPTGSIIGKIQAKDNDVGVNGLISYHFNSGNDNGLFSIQHSSGLIMLVKDLDFENSKAHN
LNVIAKDGGWHSKMGSINITVYVTDLNDNPPIFTSTEYMASVSENALIGSLVLQVRATDA
DSGIHGEITYSLIAGDWNLFNLDGTNGTITTSEVFDFEQHQHFKLTVKATNIGYPYLHDT
AHVHVQVTGINEFIPAFQRHLYNFSVSEALPLWTEIGRVVAVDYDMGPDGDVFYVLAGQS
KKAGFVVDEHTGIIYISRDLKNRGQNYDVLRVLAKNKGPITGFNMDEALMHIHILDENDP
PEFESMVYVVAVPEDAFIGTAITKVKAVDRDVIPEWSRFLYSIEHGNINSSFVIDPVKGI
ISVHSYLDRELWPFYNLTVIAVDEGSPAVTGTTKVTITIVDVNDNSPKLAITEGFIRENQ
PSGTMVSTLTATDEDLPPNQGPFTYWLMKPAVENSFSLTSDGALFTSRPLDREHNPFFHL
HIVVQDAGKPSLSSTTVFHVKVLDENDNAPSQRNINILVKYYGSSFPGGLIGNVRPNDRD
ELDGFNCAIRKGPLRMFSFPFGMCNLWSSPYQGEATYNISIEASDQLHPSVNNSIYVSYK
GFTNVSLDNCVLFYISISTLEEFLSLKYLKFVKALDSLFNLQASKTHVFGIKLLQDKMLL
LAAVKSYNGQYLTADVASGISSVHKRLLEGQSNVTISQITSDPCTLQPCQNGATCSRNIH
ISQDVVVLESSSLIFVSPYFAATFNCSCRTGFTGDSCDLDLDECDKTPCENGGTCYNNPG
TYFCQCRDGFSGPHCNTVDNECQTVMCLNGGTCWNKQGGFICDCRPGYEGRFCDYIVDHC
ASSPCVNGYCFSLLTGYSCQCPFGVSGVNCEEHTYGFQELSYVEFPPLDPQNNFISLEFA
TLQQNSLLFYNQGDPSTLEFLAVEIVNGRLWLSYDLGSGVVRLVTGKLVADGSFHNITVR
RTGNIASLEIDNCSTNEPQGFCLSENDGSKATQRTLEVTNNLTFGGIKSIDVILQRQIRT
HDFVGCMRNIQVNNIGPDAFKSMKSQNILDRCPRSDVLPCQTVDCLNGGVCEDRWFHHHC
QCRDLFTGSNCAINLAEQHILSLDGEAHIEFSVKESYRRKQLLQAILDGKDGDSPGFDSV
EIKMRTVRKNCVLVVCWCPTAFLNLKISNGKPLCVFTNVTSDHQLEVHVDVDVSDGQWHV
LQLRRRGAHITLLLEDRPAANNTNITISQSVFLVETIFLGTAPLAESRDENLGFKGCIEY
IKFNGHLLPFKGYNEIVEARSIPVDLQNVCISPNRCVLTPCLKDSCPSAPCWIDKDCSFP
SNKDYWCICLHNVSGSACSHSQKSAPLWIVAVVFPIAFILLVLVLCIVIKRQGKLGLKAK
DVYLKPPPKQHGTDNLAFSAGLADECPRNICNEGSKQPDLIKPKDSTHAVESYCEVGPPC
NLCLGGSELEYYEIDSTYTIYSTDVNTAQLEDNPGIDPNRPQIFQRETNHGPPSPKLNLK
TSADHFHHWQRQSHVFKSRLAPDLIEPPQHLSKGEVEKLNGTWEHKGEFPTTHCRTVWSG
GAIETSSESESHCSFTCSEYEYERELSLISSEDNKDEHISEDLSRGQFILLAPSPFRDHA
TVTHPCVQSLHCSSVSSGVQHLESLLNLGVHFSTYAGVFEDIAGLPTDTSNDFQSDPEEV
I
NT seq
9006 nt
NT seq
+upstream
nt +downstream
nt
atggacacgtttggattaataaatctctgtgcgtttctcctgcactcggcgattttcttc
agatttgctgtgagtgatgtttgctgcatcagttcatcgggtaaactgtgggttcacagc
aatgaaaaattgttcaatgtgtctatgagcaagcctggcataactccacttcgcaataga
aggttcacacaactatcattttccaaatctgtatattcatttgaagttagggaagacaca
ccccctgggacgatagttggacatgtggaggttttatatgacgaggaacttgcaaagtca
gtgtactctgtgctggaagatgatggtgatggccttttcctactcgacccacattccggg
aaattcctcttgtcccgtgctgtggattttgagatggagcgatactacatcctgaccgtt
gcagcacaacaaggggacgggcagctcaatagggtccgggtgtatttcaacgtgattgat
gtcaatgacaaccctccagttttcagtcaaaatacctttcttgtctctgtgttggaggac
tcacctgttggaatgtgttttctcactctgaatgtttcagatgcagatgacggtatatat
ggaaaagtggatttggtggtgacatcagaagatcctgaatgcaaattttccataaaccag
catggggcgctgtgtttaaaaggtgatttagacagagaaagagtctcgacacatagcctc
ctcgtacatgccagtgatcgagctttaccaccagatgttcggctcacaacctcagcccaa
gtgaccatttacattctggatgtcaatgacaacccacctctcatcacaacaccccacact
gttatatttccagaggatgccccccttaattcggtggttacggtggttcaagccacagat
gctgattctggtctcaatgctgaaatagttttcagcttaaagaatccgacagaagacacg
ttcagtataaacagctcaactggagtcatgtacctgcaaaggctgttagacagggaactt
aacgatgccattacagtcacagtaaaagtcaaagacaaaggtgtacctcagttgttcagc
tcattcaacctcactgtgctaatcgaggatgtcaatgaccacaatccagagttcacccaa
agctcctacaacctcacaatatatgaggatgttccacgtggagcaagccttctcagggtt
catgcatctgatcaagacattggtttgaacggggacgtgcggttttacatctcagagaaa
ggcttcatgatagactcggttctaggtgtgctttcagtgatggatgagatggatcgtgag
aagaaggctttttacagttttccagtcacggcagtagaccagggtcacgttcaacggtct
gccacagcaaccatcaatatcacaatcgtagatgttaatgactgtgtgcctagtttttcc
tctgaatcgctgaccttacatgtgcttgaaaatggagaggattctactcagaacattcat
cagatatacgcagttgatgatgacctggatgtgaacagtttactgacctactctatagag
tcgggtaatgaagaggggctttttttacttcatctcaatgggacgttccacatcctagaa
aatcttgaccgggaatcgaaaagtcagcacatgctgaaagtgatcgctgttgattcaggt
tttccatcactgacaggcacagggaccttgattattattgtcgatgatgtcaatgacaat
attccagtatttgatgaggacacatttgatactcgtgtgtcagaggatgcttctgttgaa
actgtgtttgggagagtttcagcatcagacatagatgacggttctaatacaccactaaga
tattatttagatggatcagatgttcccctttccatcaatgaaacatctggagagttgttc
accataagtgcactggaccgagaggtggtggcttcttacaggttcttcgtgtttgtgact
gatggacatcccacacggatgctttccagctcagctgctgtttcagtaactgtagaggat
gtaaatgatcatactccagcatttctttatggaccatatgtggccaatgttcctgctgga
atagccaaaggatcggtcgtgtgctcagtgatggcagaagatgcagatgatggattgaac
gccaaaatcaaattttctcttcatggccgatatgcccatcttttttctataaattttctc
acaggaacggtcttcactgcagattcagtgaagagaagaaatgacatcacggttgacgtt
cacgtgcaagacggagcagatgatccaaaaatcgacacaacaacattgactgtcagattt
cagaatgactcatactttccttatattgcagttcaagtatataaggccttcctttcagag
gatgaacctaccgggacactggtggcttatgtaactgcagaaacagcaaggaatttacct
gtgtccttctacctggcctctggaaactttggtgaggcatttgagcttcaccatagcact
ggtgagctgactgtgaagaaccctttagattttgagaccgatgtgtattttcatctgata
gttgaagccagagactctgggatgccaccttattcatcctatgccgaaattaatttcaac
atcagcgatgtaaatgataacccacctgtgttttcacaaaaaatctacaggtgtgaggtt
catgagaacttggcagcacgcaaggtttgtgatataatagcaactgacgctgactccgga
gtgtttgggaaggtgaagtattttatcttggctggtaatatcgaaggggcatttaaaata
gacatgaatcacggcactctaaccacaacaaagcggttagatagagaaaaaataccccat
tataatctcacagtcaaggccgtcgatgaagacaaagtcagtttttctgccatcgctaag
gttataatcaccgttcttgatgtgaacgatcacgcgcctcgattctcacaaattttcatc
acagaggttcctgaggatgctcctgttggcttttcgatcatacagataacggcaacagat
gatgatgttggtgtaaatgctgttattgagtatacaatcttaaatagccaaaataaaaac
ttccccttcagtattgacaaagcaagtggcataataatattagcgcaccagctggacaga
gaagatcaggatctttatatagtgaaagttaatgccaatgattctgcctggagtgtcagc
acagacgtcacctttgatattacggatgtcaatgacaacacaccattttttactcaacct
ctgtactccatcactgtgcctgagatgaatgaccatgaagtgttcctccttcaagtgagc
gccaccgaccaagatcttaatcagaatgctcagatcctgtactttattgacccgccaaat
gagcatttttttgtgaatgcttccactggagatattttgaccaaacagcccgtttctctc
tatgaatctgactcattaatcttgagttttacagttgtagcttctgactgtggcagtgtt
cctttgaacagctccaccctcgtctcggtgacatttgtactatacaatcgtttcccacct
ttgtttttatccatcaggccgttggtccctgtccctttaaacatggaagtgggaacggag
gtgatcctgttatcagcaatagatcaagactctcttgaaatgaacaacagcattgagtac
ttcaatagtggtggaaatggatctctatattttcaggtagagcacaacagtggaagagtt
ttggtgaataaaactttaaaaaacagtctcaacagtatcctgtctcttcaagtcactgct
aaagataaaggttaccctccgctttccacccaaaacgaaatcagtttcacagtcacagga
gagaatctcttctcaccatatttccctgacagtaaggttcagttttttgttcctgaagat
ttacccacgggttcaatcattggaaagatccaagccaaagataacgatgttggagtaaat
ggtcttatttcctatcattttaatagcgggaatgataatggactgttttccatacaacac
tcttcagggctgatcatgctggttaaagaccttgactttgaaaattcaaaagcccacaat
ctaaatgtcattgccaaagatggaggctggcattccaagatggggagtatcaacatcacg
gtatatgttacagacttaaatgataacccccccatatttacatctacagaatacatggcc
tccgtttcagaaaatgctttaatcggaagcctggttttgcaagtcagggctactgatgca
gactcagggattcatggagaaatcacctattcgctcattgcaggagattggaatctcttc
aacttagatggtacaaacggcactattaccacttctgaggttttcgattttgagcaacat
cagcattttaaacttacagtcaaggccaccaacataggctatccatatttgcacgatact
gcacacgtacacgtacaggtcactggtattaatgaattcatccctgcttttcaaagacat
ctatacaacttctcagtgtctgaagctttgcctttatggacagaaataggcagagtagtc
gctgtagactatgacatgggacccgatggagatgtgttctacgttcttgcaggacagagt
aaaaaagctggctttgtggtggatgagcatacaggaataatatacatctccagagatttg
aagaaccggggccaaaattatgatgtccttcgtgtgttggcaaaaaacaaaggacctatt
actggatttaatatggatgaagctttgatgcatattcacatattagatgaaaatgaccca
cctgagtttgaatctatggtttacgtggtagcagtgccagaagatgcttttattgggaca
gccatcaccaaagttaaagcagtggaccgtgatgtgataccggaatggagcaggttcttg
tacagcatagaacatggaaatataaacagttcctttgttatagatccagttaaggggatc
atttcagttcacagttacctggatagggagttgtggcctttttataacctcacagtcatt
gctgttgatgaaggttcacctgctgtaacaggaaccacgaaagtaaccattaccattgtt
gatgttaatgataactcacctaaacttgcaatcacagaaggctttatcagggaaaaccaa
ccttctggtaccatggtgtccaccttaacagcaacagatgaggaccttcctccaaatcaa
ggtcctttcacgtactggctgatgaaacctgctgtcgaaaacagcttttcactgacatct
gatggggcactctttacctcaaggcctcttgatcgggaacacaaccctttttttcacctg
cacattgtggtgcaagatgctggtaagccgtcgttgtcctccaccactgtgtttcatgtc
aaagtcctggatgaaaatgataacgcaccatcgcagaggaacatcaatattttagtgaaa
tattacggaagctcctttccaggagggctgatcggaaacgtgaggccgaacgatcgggac
gaattggatgggttcaattgcgccatcagaaaggggccgctcagaatgttcagtttccca
ttcggtatgtgtaacttgtggtcctcgccgtaccaaggagaggcaacgtataatatatcc
attgaagcgagtgatcagctccacccctctgtcaacaacagcatctatgtcagttacaaa
ggctttactaatgtctctctagacaactgtgtgttgttctacatttctatatctacactt
gaggaattcctctctttaaagtatttaaaatttgtcaaagctctggatagcctctttaat
ctacaggcgtccaaaacgcacgtgtttggaataaagttactacaagataaaatgcttctt
ttggctgctgtaaaaagctacaacggacagtatctgactgcggacgtggcgagtggaata
tcaagcgtgcataaacggttactggaaggacaaagcaatgtcactatatcccaaataacc
agtgacccctgtacacttcagccttgccaaaatggcgccacgtgcagcagaaacattcac
attagtcaagacgttgttgtgctggaaagctctagtcttatatttgtatctccgtatttt
gctgcaacattcaactgttcctgccgaacaggcttcacaggagattcgtgtgacctggac
ttggatgaatgcgataagacaccttgtgaaaatggaggaacttgctataacaatccagga
acttatttttgtcaatgcagagatggattctcagggccacactgtaataccgttgacaat
gaatgtcaaacagtgatgtgtctaaatggtggaacgtgctggaacaaacagggagggttc
atctgtgactgcaggccaggatacgaaggtcgattttgtgattacattgttgaccactgc
gcttcctccccatgtgtaaatggttactgcttcagtttgttaactggatattcttgtcaa
tgtccatttggtgtaagtggagtcaattgtgaagaacacacttatggctttcaagagctt
tcctacgtcgaatttcctccattagatccccaaaataacttcatctctctggaatttgca
actttgcagcaaaactctttacttttctacaaccaaggtgacccatcaactttggagttc
ctagccgttgaaattgtgaatgggagactgtggctctcttatgatcttggatctggggtg
gtgcgattggtcacaggaaaactagtggctgatggaagttttcataacattactgttaga
agaaccggaaatatagcctctttagaaatagacaactgctctaccaatgaaccgcaaggc
ttttgcttatcagaaaatgatggatcaaaagcaactcaaaggactctagaagtgaccaat
aatctgacgtttggtggaataaagtccattgatgtcattttgcagaggcaaatcaggact
catgactttgttggatgtatgagaaacatacaagtgaacaacattggtccagatgccttc
aaatccatgaaatcccagaatatacttgatcgatgtccacggtcagatgttcttccctgc
cagactgtagactgtttgaatggaggagtttgtgaagaccgatggtttcaccatcactgc
cagtgtagagatcttttcacaggatccaactgtgccataaatttggctgagcagcacata
ctatctctcgatggggaggcgcacattgaattttcagtcaaagaaagctacaggagaaaa
cagctcctgcaagccattttagatgggaaggatggagactccccaggatttgacagtgtt
gagatcaagatgaggaccgtcagaaaaaattgtgttttggttgtgtgctggtgtccaaca
gcttttctaaatcttaagatatcaaatggaaaacctctgtgtgtattcacaaatgtcaca
tctgatcatcaactggaggtgcatgtagatgtagatgtgtctgatggacagtggcatgtt
cttcaactgcgcagaaggggggcgcacataactctgttgctggaggatcgacctgctgca
aacaacaccaacatcactatatcccaatctgtattcttagtagagaccatttttctaggc
acagctcccttggcagaatccagagatgagaacttaggttttaaaggctgtattgagtac
atcaaatttaatggtcaccttctccctttcaaaggctacaatgagatagttgaggccaga
tccatccctgttgaccttcaaaatgtgtgcatttccccaaaccgctgtgtcctcacccca
tgccttaaagattcttgtccttcagcaccctgctggattgacaaagactgtagctttcct
tcaaataaggactactggtgcatctgtctacacaatgtgtctggttctgcatgttctcat
tctcaaaagagcgcccccttatggattgttgcagtcgtttttcccattgccttcattttg
ttggttcttgtcctatgcattgtcattaaaagacaaggcaaacttggccttaaagcaaag
gatgtctacctcaagccacctcccaaacagcacggcacagataacctggcgttcagtgca
ggacttgctgatgaatgtcctcgaaacatctgtaatgagggcagcaaacaaccagatttg
ataaagccaaaagactcaacacatgcagtggaaagttactgtgaagttgggccaccttgc
aacttatgtttgggaggaagtgaactggaatattatgagattgacagcacatacacaatc
tatagcacagatgttaataccgcacaactagaggacaatcctggtatcgatcccaacagg
ccgcagatttttcaacgtgaaaccaatcacggacctccttcacctaaacttaatctaaaa
acgtctgcggaccactttcaccactggcaacgtcaatctcatgtctttaagagcagactg
gctcctgatctgatcgagcccccacaacatctctcaaaaggcgaggttgaaaagttgaat
ggaacctgggaacataaaggagagtttcccacaacgcattgcaggaccgtctggtcaggc
ggggcaatagagacttcatcagagagtgaaagtcactgctcatttacttgctctgaatat
gaatatgaacgagaactttcccttatcagttcagaagacaacaaagatgaacatatatct
gaagatttgtccagaggtcagtttattctactggccccgtcacccttcagagatcatgcc
actgtcacacatccatgtgttcagagtcttcactgctcctctgtttctagtggagttcag
catcttgagagtctcctaaatctaggagtccatttcagtacctatgctggtgtgtttgag
gacatagctggcttaccgaccgatacgtcaaatgattttcagagtgatccggaggaagtc
atttga
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integrated database retrieval system
