Paramisgurnus dabryanus (large-scale loach): 135771025
Help
Entry
135771025 CDS
T10799
Symbol
rpa1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit isoform X1
KO
K07466
replication factor A1
Organism
pdab Paramisgurnus dabryanus (large-scale loach)
Pathway
pdab03030
DNA replication
pdab03420
Nucleotide excision repair
pdab03430
Mismatch repair
pdab03440
Homologous recombination
pdab03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pdab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
135771025 (rpa1)
03420 Nucleotide excision repair
135771025 (rpa1)
03430 Mismatch repair
135771025 (rpa1)
03440 Homologous recombination
135771025 (rpa1)
03460 Fanconi anemia pathway
135771025 (rpa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pdab03000
]
135771025 (rpa1)
03032 DNA replication proteins [BR:
pdab03032
]
135771025 (rpa1)
03400 DNA repair and recombination proteins [BR:
pdab03400
]
135771025 (rpa1)
Transcription factors [BR:
pdab03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
135771025 (rpa1)
DNA replication proteins [BR:
pdab03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
135771025 (rpa1)
DNA repair and recombination proteins [BR:
pdab03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
135771025 (rpa1)
MMR (mismatch excision repair)
135771025 (rpa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
135771025 (rpa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Motif
Other DBs
NCBI-GeneID:
135771025
NCBI-ProteinID:
XP_065137114
LinkDB
All DBs
Position
8:23074324..23102482
Genome browser
AA seq
600 aa
AA seq
DB search
MTVVLSEGAIESLTKGGDVSSPVLQVLNIRKLDGGNGLSRFRLMMSDGLHTMSSFMLSTQ
LNPMAEQNQLTPNCVCLVKRHVTNVLKDGRRVVVILDMEVVKSADQMEGKLGDPTPYVEG
QSKAPQTVAPAVRPLQPQNGGDGSMHRGPAHSFGKKPMAAPNTPGGSSKVVPIASLNPYQ
SKWTIRARVTNKSSIRTWSNSRGDGKLFSMELVDESGEIRATGFNQEVDKFYSLIEQGKV
FYISKGTLKIANKQFSSLKNDYEMTLNGETSIIPCEDSTDVPMLQCDFISIADLEAREKD
SVVDVIGVCKSVEDVARITTKNSREVSKRNIQLMDMSGKVIQLTMWGNDAETFDGTGQPI
LAIKGARLSDFGGRSLSTQFSSTVMINPEIPEAYKLRGWYDKEGHAMDGQSMTEMRGPGG
GGNTNWKTLTEVKNEQLGHGDKADYFSCVATIVYMRKENCLYQACPSKDCNKKVVDQQNG
MFRCEKCDKEFPDFKYRLMLSANIADFGDNQWVMCFQDSAETILGQNSAYLGQLKDSNEA
AFDEVFQHANFNTFLFRNRVKLETYNDESRIKVTVVEAKPVDHREYSKRLIINIRKAATQ
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgactgtggtattatcagagggagcaatagagtccctgactaaaggaggtgacgtcagc
agccctgttcttcaagtgttgaacatccgcaagcttgatggaggtaatggcctgtcccgc
ttccgacttatgatgagtgatgggcttcacacaatgtcctcattcatgctctccacacag
ttgaatcccatggctgagcagaaccagttaactccaaactgtgtgtgcttggtcaaacgg
cacgtcactaatgttctcaaggacgggcggcgtgtggtggttattctggacatggaggtg
gtcaagtcagctgaccaaatggaaggaaaattaggagacccaactccttatgtagagggt
caatccaaagctccacaaactgtagctccagctgtacggccattgcagcctcagaatgga
ggtgatggttcaatgcatagaggacctgctcacagctttggcaagaagcccatggctgcc
cccaacactccaggtggcagctccaaagtagtgcccattgccagcctcaacccgtaccag
tcaaaatggactattagagctcgtgtcaccaacaagagcagcatccgcacatggagcaac
tctaggggagatggcaagctcttctctatggagcttgttgatgagagcggagaaataaga
gcaactggatttaatcaggaagtggataaattttactccctcattgagcagggaaaagtc
ttctacatttccaaaggcaccctgaagatcgccaacaagcagttctcatcattgaagaat
gactatgagatgaccctcaacggtgagacgagcatcattccttgcgaagacagcactgat
gtccccatgctgcagtgtgatttcatctccattgctgacctggaggcccgggagaaagac
agcgtcgtagatgtgatcggggtgtgtaaatccgtggaggatgtggcgcgcatcacgacc
aagaacagtcgtgaggtttccaagaggaacatccagcttatggacatgagtggaaaagtc
atccagttaaccatgtggggcaatgatgcagagacgtttgatggcactgggcagcccatc
ctggccatcaaaggggcaagattgtctgacttcggtggacgttcactctccactcaattc
agcagcacagttatgatcaaccctgagattcccgaggcatacaaactgcgaggctggtat
gataaggagggacatgctatggatggtcagtctatgactgagatgagaggaccaggcggc
ggtggaaacacaaactggaagaccctgacggaagtcaagaatgaacaattgggtcacgga
gataaggctgattatttctcctgtgtcgccactatagtctacatgcgtaaagagaactgc
ttgtatcaggcttgcccaagtaaagactgcaacaagaaagtggttgaccagcagaatggg
atgttccgctgtgagaaatgtgacaaagaatttcctgacttcaaatatcgcctcatgctc
tcggccaacattgctgattttggagacaaccaatgggtgatgtgttttcaagacagcgcc
gaaaccattctaggccaaaactcggcttatctcggccaactcaaggattctaatgaggca
gcgtttgatgaggtcttccagcatgcaaactttaatacctttctcttccggaacagagta
aagctggagacctacaatgatgaatctcgcattaaagtgacagtggtggaggcaaagcca
gtggaccacagagaatacagcaagcggttgatcatcaacataaggaaagcggccacacag
taa
DBGET
integrated database retrieval system
