Paramisgurnus dabryanus (large-scale loach): 135773541
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Entry
135773541 CDS
T10799
Symbol
edc4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
pdab Paramisgurnus dabryanus (large-scale loach)
Pathway
pdab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
135773541 (edc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdab03019
]
135773541 (edc4)
Messenger RNA biogenesis [BR:
pdab03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
135773541 (edc4)
mRNA degradation factors
5'-3' decay
Decapping complex
135773541 (edc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_HPS5
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Pdc1_Ge1
EIF3I
Motif
Other DBs
NCBI-GeneID:
135773541
NCBI-ProteinID:
XP_065139271
LinkDB
All DBs
Position
9:23515524..23548581
Genome browser
AA seq
1421 aa
AA seq
DB search
MASSSNMDIEGATQHLRDILKLDRPGNSAGKLPGKGAARPRRDDVAHSHSAWLLSLKNFD
FLKSSLVESQRKTSFNGELNGVLGAELGASGHMSVEQSTHNSDKLNGQDTQTICLSGDDE
STYVPIRANNVEIVSSRDSSIDSKARGSNKVKIQTVAKYDWEHKYYYGNLIAVSNAYLAY
AIRGANNHMIRVFRLDSAERSLLKGFTGAVTDLAFAHLGSTLLGCVDEAGNMFIWQLTIQ
NSKIQDEVIVHIRRPEDTPLNSNRRLIWCPFIPEDNEENPEDACQTLALLHEDRAEVWDL
DILRSHNSSWPVDATDLKEGFITIKGHTARISEGALSPDGTVLATASHDGYVKFWQIYIE
GQDQPRCLHEWQPHNGRPLSCLLFCDNHKKQDADVPFWRFLITGADQNQELKMWCTVSWT
CLQIIRFSPDPFNSSVLPSLKASLDLSAELLILSDVQRKVLYVMELLQDQEKGHASFTAV
SEFLLTHPVLSFGVQDVTHTRLRHTEVLPPDEESESMTAEGSQGPSESRSGIQIKLYCVH
TKSLQDVQIWFQPNQGATSSHFMPQTGSQGGFGFSDPLADLNVEAMSSDKESADSGSQND
LSKILPLPSPADFMSPAPSAMPTLMTPDAFMTPSTSMPASPGSSASSLTIVTAMSSSDSG
TRGGDDLAQSPKMSVECSSSSLALNASTSSPRSNSILISGLGDNIQVSPPNPPLSLDLQA
IDPMVVPQASPTRARSPDVISSASTAMSQDIPEIASETLQRGLGGASADPISALHSDSMA
SAASVLHLLSPRRRSGAEHSMLPLDRVVTAVDGEQRLNNTPSLLETALSQENAAAAAGSC
SDNSVNHAWPAAPDITRETRNSLRDNGLGDCSREEIKDRHISSPYHRRTYHLTQNDSQDA
SAEQSDHDDEVASLASSSGNCGPRASHRLPVKDWKTSPRGSPKLKRKSKKDEGESSQSRQ
TDSQMSVEVQDELLQMLRTQQREIAELRQNQLDLLQRVTNHMDAVQSSIMAHIEHAMLAQ
QEQEQRRMERFLAEGQSRNQQLQDQLVQQLVQTMSNSLSNRLDKVVREEMKKTVPQTISK
SLEPMTSQMSSTIAAKLTAVEGALKENVTKVVKSKNTTDAIGRAAAEAMQGPIQAAYKET
FQSIVLPVFERGCQSMFQQINDSFKQGTNEYIQQLETHIKNRKQQDQDARDPVIGQLQQM
IDTVQSSQDQLANTVTASVHSDVQHQLHMIVGNLQDSILTQVQRIVKGEVSLAMKEQQAA
VTSSIMQAMRSAAGTPVPTAHLDYQAQQASILQLLQQGQINEAFQQALSAADLNLVLYVC
ETIDSQQVFSQQPCPLHQAVLLSLIQQLSTNLSTRTELKISYLEDAVMNLDHGDPVTRDH
MSAVLSQVRQKLFHFLQQDTHSPLSKRARRLMMMLQGLVNH
NT seq
4266 nt
NT seq
+upstream
nt +downstream
nt
atggcttccagttccaacatggatatagagggcgcgacccagcaccttagggacatcttg
aaactggatcgtcctggtaattcggccggtaagttgccgggaaaaggagcagctaggccg
cggcgggatgatgttgcgcactcgcattccgcatggctgttgtcgctcaaaaattttgat
tttctaaagtcctctttggttgaaagccaaagaaaaacatctttcaatggagagttgaat
ggagttcttggagctgagcttggagcaagtggacatatgtcggtggagcagagtactcac
aactcggacaaactcaatggacaggacacacagaccatttgcctttcaggagatgatgag
tccacctatgtacccatcagagcaaacaacgtggaaattgtgtccagtcgtgactctagc
attgacagtaaggctcgtggtagcaacaaggtgaaaattcaaacagtcgccaaatatgac
tgggagcacaagtactactatggcaatttaatagccgtctccaatgcatacttggcttat
gccatcagaggtgcaaacaaccacatgatccgtgtgtttcggttggattctgctgaacgc
tccctattaaagggcttcactggtgcagtcacagaccttgccttcgcccacctgggctcc
accctgttgggctgcgtggatgaggctggaaacatgttcatttggcagctcacgatccaa
aacagcaaaatacaagatgaagtgatagttcacatccgtaggcctgaggacacaccactg
aactccaaccgcagactgatctggtgtccctttatcccagaggacaatgaggagaaccca
gaggatgcgtgtcagacgttagccctgcttcacgaagacagagccgaggtttgggatctt
gatatcctccgttcccataacagctcgtggcctgtggatgccacagacctgaaagagggc
ttcatcaccatcaaaggacacacggcacgcattagtgagggagcactttcccctgacggc
acagttctggccacagctagtcatgatggttatgtcaagttttggcagatctacattgag
ggacaggaccaacccagatgcctgcatgaatggcagccacataatggacgtcctctttcc
tgcctgctcttctgtgacaaccacaagaagcaagacgcagacgttcctttctggcgcttc
ctcatcactggagctgatcagaaccaggagctgaagatgtggtgcacagtatcatggacc
tgcttgcaaattatcagattttctccagatccattcaacagtagtgtgctacccagcctg
aaagccagtttggacctatctgcagagcttcttattcttagtgatgttcagaggaaggta
ttgtacgtaatggaacttctacaggatcaggaaaaaggtcacgctagcttcaccgcagtt
tctgaattcctgcttacacaccctgtgctaagctttggtgtgcaggatgtcacccacaca
cgactgcgccacactgaggttctaccaccggatgaggaaagcgaaagcatgacggcagaa
ggaagccaaggaccttcagagtccagatcaggaatccagattaaactttactgtgtgcat
acaaaatcgctacaggatgtgcagatttggttccaacccaatcagggtgccacatcatcc
cactttatgcctcagactggatctcagggtggctttggcttctctgaccccttggcagat
ctgaatgtggaggccatgagctctgacaaggagtctgcagatagcgggtcacagaatgac
ttgagtaagattctgcctctcccatctccagctgacttcatgagtccagctccgtcagca
atgcccaccctcatgaccccggacgccttcatgacccccagcacatccatgcccgcctct
cctggcagcagtgccagcagtctgactatcgtaacagccatgagcagttcagacagcgga
acaaggggtggagatgatctggcccagagccccaaaatgtctgtggagtgtagcagcagc
agtttggctctcaatgccagcacaagcagtccaagatccaactccatcctcatctcaggc
cttggggacaacatccaggtttcccctccaaacccccctctctccctggacctccaggct
atagatcccatggtggtcccccaggcctctccgaccagagctcgctctccggatgtcatc
tcctcggcatctaccgccatgtcccaagacatccccgagatcgcctctgagaccttgcag
agagggctgggtggtgcatccgccgaccccatttccgctctgcattcggacagcatggca
tcagctgcatccgtcctccacctgctgtccccaagacgtcggagcggtgcggaacacagc
atgctgcctctggatcgggtcgtaactgctgtggatggagagcagagactcaataacacg
ccctccctgctggagacggctctttcgcaggagaacgcggctgctgccgcgggatcctgt
tcagacaacagcgtgaaccatgcttggcctgcggctccggatattacacgtgagactcgc
aatagcctgagagacaatggtctgggagactgctccagggaggagataaaggacagacac
atttcttcaccataccacagacgcacttatcacctgacacagaacgacagtcaagatgca
agcgcagagcagagcgatcatgatgatgaagttgccagtctggcctcatcctctggaaac
tgtggccctcgtgcctctcacagacttcctgtaaaagactggaagacgtcacctcgcggt
tctcctaaactcaagaggaagagcaagaaggatgagggcgagtcctcacagtcaagacag
actgacagccagatgagcgtggaggtacaggacgagctcttgcagatgctcaggactcag
cagagggagatcgctgagctcagacagaaccagctagacctgctacagagggtcacaaac
cacatggatgctgtacagagctcaatcatggctcacatcgagcacgccatgctggcacaa
caagagcaagaacagagaagaatggaacgatttttggcagagggacaaagccggaaccaa
cagcttcaagaccagctggttcagcagctggtccagactatgagcaacagtctgtccaac
cggctggacaaagttgtacgtgaagaaatgaagaagaccgtcccacagaccatatcaaag
agtctcgaacccatgactagccaaatgagcagcaccatcgctgctaaattaaccgccgtc
gaaggagcattgaaagaaaatgtcaccaaagttgttaagtccaagaacactacagatgcg
atcggccgtgctgctgcagaggccatgcagggtcccatccaggcagcctacaaagagacc
ttccagagcatcgtcctgcctgtgtttgagcgaggctgccagtccatgtttcagcagatc
aatgacagcttcaaacaggggaccaatgaatacattcagcagctggaaactcacatcaag
aacaggaagcagcaggaccaggatgcacgggatcctgtgattggccagctgcaacagatg
attgacacagtccagagttcccaagaccagctggccaacactgtgacagccagtgtgcac
tctgatgttcagcatcagctccacatgatcgttggaaatctccaggactccattttgacg
caagtacagcgcatagttaagggagaggtgagcctggcaatgaaggagcagcaggcagcc
gtcacctccagcatcatgcaggccatgcgctcggccgcaggaacacctgtccccacagca
cacctggactaccaagcccaacaggccagcattctgcaattactacagcagggccagatc
aacgaggcttttcaacaggctttgtctgcagccgacctgaatctggtgctgtatgtgtgc
gaaaccatcgactctcagcaggtcttcagccagcagccctgtccactccatcaggccgtc
ctcctgtcgctcatccaacagctctccacaaaccttagcacacgcacagaactaaagatc
agctatctggaggatgctgtgatgaacctcgaccatggggatccagttaccagagaccat
atgtctgcagtgctgtcccaggtacgacagaagctcttccacttcctgcagcaggatacc
cacagtcccctgagcaaacgtgctaggcgcctcatgatgatgcttcagggtctggtcaat
cactag
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integrated database retrieval system
