Paramisgurnus dabryanus (large-scale loach): 135773628
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Entry
135773628 CDS
T10799
Symbol
nlrc5
Name
(RefSeq) protein NLRC5
KO
K22615
NLR family CARD domain containing 5
Organism
pdab Paramisgurnus dabryanus (large-scale loach)
Brite
KEGG Orthology (KO) [BR:
pdab00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
pdab04054
]
135773628 (nlrc5)
Pattern recognition receptors [BR:
pdab04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
135773628 (nlrc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
NLRC4_HD2
LRR_4
LRR_14
LRR_NXF1-5
LRR_8
AAA_16
AAA_30
Motif
Other DBs
NCBI-GeneID:
135773628
NCBI-ProteinID:
XP_065139385
LinkDB
All DBs
Position
9:complement(25755341..25777882)
Genome browser
AA seq
1743 aa
AA seq
DB search
MDWVGSILAVVAQEASALVELLRDQNSNVLDRILALVDLRTQDQLRSLDTRDRVTAIVDY
FKTSDSSVCRCFLQIVLDYCVNIPFYLETTLVSVAENASGPNFNTSDTDKSSPSHNVKRQ
RLDHLESYTEALKSMLLQKHETVTQTVVKDIRLDDTWVYLRHRNPLRTKDRTTQDHQDGD
EALSENKVSVESLLQTYGRVVVLLGQAGSGKTLLVHCLGQSWANGFFPSIHLLFLLEFRQ
LNLMSRDLSLKELLFLFYPPRNEEQGEAVFAFIFSNPEKVCFIFDGYDEFRAKFTNPEKL
HSPIDSNNPLPMPDLLSGLCNRKILTNCTVLVTCRPRDVTDMFGSPGFTTCELLGFDRLG
VKEYAEQYFHKKGDELKQKAVNLLMDNRHLLSMSYVPGLCHICCVCMDYLFSNNGAHGNL
QLPVSLTQIYIQILSAFLSRISKGEMSGTPLLQRYKTKIIEMSQLALNGLEKSSIVFMAT
EVSSDLQEFGVRTGILSRVKLTCEDGSSGYGFTFMHLTMQEFLAALHLMTSQSITDGQLK
KKLNLKTRWTTKTDPKSVFTDSLHLYVCGLAAEACTASLVQLKGTEGAKAWVTKRQGVVR
GILRTLAGSASQTGPKIVELCRCAHETQDVALARAVGSRPQFELRNIRLNAVDMEALAFV
TAAADHTVCLDFGGCSIDLDCLEILPSFENVDHLIFRSRKYDDKFAEALCGILSKLHSLR
RLDFISGGLTDTGATKLARTLQDCPHITHLNVSDNSLRDDGIREIAETLSVLPNISSIVM
GKNSISTKGVLMLTEKMSACPSVQELHVEGNKEINIFFSQNRNTICERVDLSQTKKSITL
KQCNITCAHVASLCTKLKGFLTILDLSNNSLGNKGLKKLLDLLPKLGLIQEINVSKNGVD
MDGLVSLVSALCTQKSLRKVDASENAKEKLVLWFDTSRRHASKQLALNDPGPHLHKTFSL
THSDIQPTYMTRLCKQLVKCKDLLDIEFSHLKLSNESVEKLLSILPEMSSLQLLNLNHVD
MSTNGALSLVRSLVNCQRVTAVELRHQAEAFIKFVPVKAEAAVCKLVEYELNKTNVEKLS
RILEDCPHLAELDLSNNFLRDEGVKCFVDCLPKLKISSSVSLNGNRMTQVGALHLVNSMN
TCEKVVAVEVSLGVEDQSLIQFMQEHVNGKTLRLRECSFEVNHLKTLVEILKRCPRLLTL
ELSSNSLNNQGLFSLMDCLAKLSTIQTIKLRNNGLSFEQTEYFVKQLSCHRQHKDIRIEE
PWMTGSAVVSLVGNCLNLESYIGEIRVKRASINLIIEADSSLHSASVNENKDFALRTLRS
ISFDDCDTEGHHLSPLILPMQKCHGLQNLKFSLLKMDRKGAEFFSVVIPSLVSLRNLIVD
LKGAAEDEVAILVEALPKAQTFESLSLSQLVVDDNGATVFGRALQNLPHLKSLNLSQVSC
WTAARGCDLVRGLVQCVSLSEIRLDSLVLNEEGIKILAGGFYSMSSLRKLSLNNISVETS
ETFVNGTGILCLLASFQGFKQMEEIELESWRMGDSGAHELVKHISSWTELRILNLSNNSV
SDQAGERLIEALSHCRALQKLQLSKNQLGQACAAKLAQVLPLLSQISDLNLSENQFGPKV
SLALCEGLVSMKALKRLHLTSIGCSDLVGVALSLKHCPSIEDVSLSWNECGDMLAQKLAE
ILPLCTMLKRLDLEANKITKTGATEIAKCLPSCPSIEVIRLWRNPIAKDDENLRDLRLNF
ASV
NT seq
5232 nt
NT seq
+upstream
nt +downstream
nt
atggactgggtcgggagcattctggcagtggtggcacaggaggctagtgctttagtggag
ttactccgtgatcaaaacagcaatgttctggatcggattttggctttagtggatctcagg
acacaagaccagttacgctcactcgatactagagatcgagtaacagcaattgtagattac
ttcaaaacttcagattcttctgtatgtagatgttttcttcagattgtattggactactgt
gtaaacattccattttatcttgaaaccacactagtgtctgtggcagaaaatgcatctgga
ccaaacttcaatacaagtgacactgataaatcttcaccatcacataatgtgaaacgtcaa
cggctagatcatttagagagttacacagaggccctgaaatccatgctgctgcagaaacat
gagactgtgacgcaaactgtggtaaaggacatccgtctggacgacacatgggtctattta
aggcacagaaaccctctacggacaaaagacaggaccactcaagaccaccaggatggagat
gaggctttatcggaaaataaagtgtcggttgagtcgctcttacaaacctatggcagagtt
gttgtgctgttgggccaggctggatccggtaagaccttgttggttcattgcctcggtcaa
agctgggccaacggcttcttcccgtccattcatttactcttcctgctggaattccgtcag
cttaacctcatgtcacgggatttgtccctgaaagaactgctgtttcttttctaccctcca
cgtaatgaggagcagggtgaagctgtgtttgcatttatcttctccaatcctgaaaaagtc
tgcttcatatttgacggttatgatgagtttcgtgccaagtttactaatccagaaaagctt
catagtcctattgattcaaacaaccccttgccaatgccagatctcctctctggattgtgc
aatcgtaaaatccttacaaattgtaccgtgttggtcacctgtaggccacgggatgtgacg
gacatgttcgggagtcctggttttacaacatgcgagctgttggggtttgaccggttgggt
gtgaaagagtacgctgagcagtacttccacaaaaagggagatgaacttaaacagaaggct
gtaaacctgttaatggacaatcgtcatcttctttcaatgtcttatgttcctggactctgt
catatctgctgtgtatgtatggattatctgttctcaaacaatggagctcatggtaatcta
cagctacctgtgtccttaacccaaatttacattcagatcttgtctgccttccttagtcgc
atcagtaagggggagatgtctggcacacctttgctccagaggtacaaaactaaaattatt
gagatgagccagctcgctcttaacggactggagaaaagcagcatagttttcatggcaaca
gaagtgtcttctgacctccaggagtttggtgtcagaactgggattttgtcccgtgtgaag
cttacatgtgaagatggatcctcaggttatggttttacgttcatgcacctcactatgcag
gagtttcttgccgcccttcatctcatgaccagtcaaagcatcacagatggtcaacttaaa
aagaaacttaacttgaaaacacgctggaccaccaagactgatccaaaatcagtcttcacc
gattctcttcatctttacgtgtgcggtcttgcagctgaggcctgtaccgccagtctggtc
cagctgaaagggacggaaggtgccaaggcttgggtaacaaagcgccaaggtgttgtacga
ggcattttacggactttagccggaagcgcaagtcaaacgggtcccaaaattgttgagctc
tgtcgatgtgctcacgagacacaagatgttgcattggcgagagctgtcgggtcaagaccc
cagttcgaactgcgaaatatcagactcaacgctgttgacatggaggccctggcatttgtg
actgctgctgcagatcatactgtttgtttggattttggtggctgttctattgaccttgat
tgtttggaaatccttcccagttttgaaaatgtggatcacctcattttccggagtcggaaa
tatgatgacaagtttgcggaggctttgtgtggtatcctgtcaaaactccattccttgagg
cgattagattttatcagtggaggcctcactgacactggagccactaaacttgccaggact
ttgcaggactgtccacatatcacacatttaaatgtcagtgataattccttgagagatgat
ggtataagagagatcgcagaaacactatccgtactacccaacatctcttctattgtaatg
gggaaaaacagcatctctacaaaaggagttctcatgcttactgaaaagatgtccgcctgt
ccctctgtacaggaactccatgttgaaggaaataaggagatcaacattttcttctcacaa
aatcgtaacacaatttgtgaacgtgtggacctgagtcaaacgaaaaagagcataacattg
aaacagtgtaacatcacctgtgctcatgtggccagcctgtgtacaaaactcaaaggcttc
ttaaccattttagatttgtccaataactctctgggtaacaagggtttaaagaaacttcta
gaccttctgcctaaacttggactgattcaggagatcaatgtcagcaaaaatggggtagat
atggacgggctggtgtcacttgtttctgctctctgtacgcagaagagcctgagaaaagtg
gatgcaagtgaaaatgcaaaggaaaaattggttctttggtttgacaccagtcgaagacat
gcttcaaaacaactggccctaaatgatcctgggccacatctgcataaaacattcagttta
acccatagtgacatccaacctacctacatgaccagactgtgtaagcaactggttaagtgt
aaagacttgttggatatcgagttctcccatctaaaattgtcaaatgaatctgttgagaag
ttgctgtcgatccttcccgaaatgtcttctcttcaactactgaacttaaatcatgttgac
atgtctacgaatggggctttgtcattggtcagatctcttgttaactgtcagcgtgtcaca
gctgttgaactcaggcatcaggcagaagcattcatcaagttcgttcctgtcaaggcagag
gcagcagtttgcaagcttgtggagtatgagctaaacaaaaccaatgttgaaaagctctca
aggatactggaggactgtcctcacctagcagaacttgatttgtccaacaactttcttcgg
gacgagggggtgaagtgttttgtggattgtttgccaaaactaaagatctccagctcagtg
agcctcaatggcaacagaatgacgcaggtgggggcactgcatctggtcaactcaatgaac
acctgtgaaaaagtggttgctgttgaagtcagtctcggagttgaagatcagtctctcatt
cagtttatgcaagaacatgtcaacggcaagactctcagactaagggaatgcagttttgag
gtcaaccacttaaagacgcttgtggaaatactgaagagatgcccaagactgcttacctta
gaattgtcatccaattcacttaacaatcaaggcctgttttctttaatggactgtctggcc
aagctatccacaatccaaactatcaagttaagaaataacggtctgagtttcgagcagact
gagtatttcgtgaagcagctcagctgtcatcgccaacacaaagacatcaggattgaagag
ccgtggatgacgggaagtgctgttgtcagtctagttggtaactgcttgaatctggaatca
tacatcggagagatcagggtcaagcgtgcatccattaatcttattatagaggccgattcc
agtcttcattctgcttctgtaaatgaaaacaaagattttgcactacgtactctgagatcc
atcagctttgatgactgtgacacagaaggtcaccatctcagtccgttaatacttccaatg
cagaaatgtcatggcttgcagaatttaaaattttctctgctgaaaatggacagaaaaggt
gctgagtttttttctgtagtcattccgtctttagtgagtctcaggaacctcattgttgat
ttgaaaggagcagctgaagatgaggtggcaatacttgtggaagcattaccaaaagcacaa
acatttgagagtctgagtttgtctcagcttgttgtggatgacaatggggctacagtattc
ggcagggctcttcaaaatctgccacatctcaagtccctcaatctctctcaggtctcctgt
tggacagcagctcgaggatgtgacttggtcagaggtctggtgcaatgtgtttctctgtca
gaaatcaggctggactcattggtactgaatgaagagggcattaagattttggcaggaggc
ttctacagtatgtcctcacttaggaagctcagcttaaacaacataagtgtggaaacatct
gagacattcgtaaatggcactggtatactctgtctcctggcttcctttcagggatttaaa
cagatggaagagattgagttggagagctggcgaatgggagatagtggagctcacgagctt
gtgaagcatatttcttcgtggaccgaactgaggatattaaatctgtcaaacaatagtgtg
agcgaccaggctggagaaagactgatagaggctttatcacattgcagagctcttcagaaa
ctacagctctccaaaaaccaactgggtcaagcctgcgctgctaaactagcacaagtcctt
ccattactgtctcagatctcagacctgaatttgtcagagaatcagtttggtcctaaagta
tccttggcactttgtgagggtctggtcagcatgaaggcactgaaaagactacacttgacc
tcaattggctgttcagatttggttggtgtggcattgtccctcaaacattgtccatccata
gaggatgtcagcttgtcatggaacgaatgtggtgatatgctggcacaaaaactggctgag
attttgcctctgtgtacaatgttgaagagacttgacctggaggccaataaaataaccaaa
acaggagccacagagattgccaaatgcctcccgtcatgtccttccattgaagtaataagg
ctctggaggaacccaattgccaaagatgatgagaatctcagagatctcaggctgaacttc
gcatctgtttag
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