Paramisgurnus dabryanus (large-scale loach): 135774187
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Entry
135774187 CDS
T10799
Symbol
arhgef12b
Name
(RefSeq) rho guanine nucleotide exchange factor 12 isoform X3
KO
K07532
Rho guanine nucleotide exchange factor 12
Organism
pdab Paramisgurnus dabryanus (large-scale loach)
Pathway
pdab04270
Vascular smooth muscle contraction
pdab04625
C-type lectin receptor signaling pathway
pdab04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
pdab00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
135774187 (arhgef12b)
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
135774187 (arhgef12b)
09153 Circulatory system
04270 Vascular smooth muscle contraction
135774187 (arhgef12b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pdab04131
]
135774187 (arhgef12b)
Membrane trafficking [BR:
pdab04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
135774187 (arhgef12b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RGS-like
PH_16
RhoGEF
PDZ
PDZ_6
PH_13
PDZ_2
SOS1_NGEF_PH
Pept_S41_N_bact
Motif
Other DBs
NCBI-GeneID:
135774187
NCBI-ProteinID:
XP_065140187
LinkDB
All DBs
Position
5:39980810..40057397
Genome browser
AA seq
1424 aa
AA seq
DB search
MSGTQSTLAERFPKKASRTGSILSKDHPPDKKPKSDKASVLPSHEFDPTGLVQRCVIIQK
DENGFGLTVSGDNPVFVQLVKEDGAAMRAGVQTGDRIIKVNGTLVTHSNHVEVVKLIKSG
SYVALTVLGRPPGLPQIPLSDGEGEEGSLSSLNSPHSPGPTGPDRSSSSPSPSERKAVPS
VWTMTEDYSRNPTAKLLKEIQETKKHIPQLPEHLNKTVGQDGSLSPRPGEGVLEDGGGDL
DRPPSWHGDPGTESSWTNSTTTPVTLSPFPESPCQRETPGHSPKTTPRDSLNSCPSPDAE
DTTDLDSQSNVGSPCLRVPPQIIGAEDDDFDTEHEQMNGQCSCFQSIELLKSRPAHLAAF
IHHVVSQFDPAPLLCYLYAELYKQSSSKETRRILMETFIIEKNASLKVTVPESIIADLER
TAHSNNAERKRPDPISEDVYREYVQRLQDTLLPDIQKHLEDFRHKRSMGLTLAEAELTRL
DTERMRDRVALEKERSCAEHIIPMIEQVLLTPQATEEDKCSTIQFVILSYMKQLGVKVKH
KPKLMNLFPKIKSIKSIKVEKDGSEEKPKNKRIHVFLPRRPSRTDAFLQNKVPELRQRLQ
KPQLPLGVGEQGDASSPPVRGSQSSEGSDGINAPVMSPPYSAPATQGTDSNYRESDTGAV
PSSALPRLGDGINSADLQDSYPVTTHFDFSPCTLEHLQEEESEIDKTQDTGTPRPDRRRM
ELLGSGEVQSEDDQGAEAELEHPNWQTLVSRDVLSTLTPQEIKRQEVINELFYTERAHVR
MLKVLDNVFYQPLNRETILPPADIKNIFTNLEEIVQFHVSLTEQMTAVRKKNEAAVIDSI
GDELLSWFSGEEEEKIKRAAGTYCSNQPFALELIKSKQKKDQRFNSFIQEAESNRHCRRL
QLKDIIPVETQRLTKYPLLLENIARYTEDPEERSKVKHAGDCCRKILSHVNQEVKEAENK
QRLEDYQRRLDLSSLKQSENPMIAEFKSLDLTKRKMVHEGPLSWKVNKDKTIELYTLLLE
DILVLLQRQDEKLILKCHSKNLAGTAETKHIFSPIIKLSTVMVRSVATDNRSFFVLSMSN
NEAQIYELMAQTVSEQRTWQCQITHRADCMKTKLHSIIPLPQTDGEREEVELINSGVQKL
NKDSEPIPLGNIQPPEKESTEVTQTPPASTNPFETKSDEEEEEESSLQDQGEGEDDEAFV
VADLNDRLMFLKQRSRQGIAIDEDEAEAFELQPLRADEALRTLAALRQLLIRHISNQEDP
DRDIEKRQAQEDGQRTNSRQGPEDSTAIGSLVENGSERDETRRQNPPEPPPGDTGFFETS
EDCGSYMVLEGYGGSVESCTDDDVHGSNGEPVAGGDSGIDLKKLLSSSSQSSKGPHINRQ
IMTHIRLLHANLQHLKDIEIKYNLVRQRLSEETATDTEENKDKS
NT seq
4275 nt
NT seq
+upstream
nt +downstream
nt
atgagcggcacacagtccacgcttgctgagaggtttcccaaaaaagcgagcaggacagga
agtattctcagtaaggaccatcccccagacaagaagcctaagagcgacaaggcatcagtc
ctcccctcgcacgaatttgaccccacagggcttgtgcagcgttgtgttatcatccagaaa
gatgagaatggctttgggctgacagtcagcggagataaccctgtgtttgttcagcttgtg
aaagaggatggagctgccatgcgcgctggtgttcagactggtgaccggatcataaaggtc
aacgggacattagtaacacattcaaatcatgtagaagttgtaaagcttataaaatcgggt
tcctatgtggctctgacggtgttggggagaccgccagggctgcctcagatccccctgtcg
gacggtgagggggaagaggggtctctctcctcgctcaactcccctcattccccaggaccc
actggcccagaccgttcctcttcatcccccagcccatcagagcgcaaagccgtcccgtct
gtatggacaatgacggaggattacagcaggaaccctacagctaaactactgaaggaaatc
caggaaaccaagaagcacatcccacagctcccggagcatctcaacaaaaccgtcggacag
gatggctccttatctccaagaccaggtgaaggagtgctagaggatggagggggagatttg
gatcgacccccttcctggcacggcgatcctggaacggagtcgtcctggaccaacagcaca
acaacccctgtcactcttagtccattcccagagagcccatgccaaagagaaacccccggc
cacagcccaaagaccacacctcgcgacagcctcaactcctgcccttcaccagatgctgaa
gacacgactgacttagactctcagtcaaatgtgggaagcccctgcttgcgtgtgcccccc
caaatcatcggtgctgaggatgatgactttgacacagagcatgaacagatgaatggccag
tgcagctgttttcagagcatagagctgctgaagtctcggcctgctcacctggcagctttt
attcatcatgtggtctctcagtttgaccctgcaccgctgttgtgctacctctacgctgaa
ctttacaagcagagcagctccaaagagacacggcgtatcctcatggagaccttcattata
gaaaaaaatgctagtttaaaagtgacagtacctgaatccatcatagctgacctggagcgg
accgcacactcaaataacgcggaacggaaaaggccggatcccatctcggaggacgtctat
agagagtacgtccagcgcctgcaggacacgcttctccctgacatccagaaacatctggaa
gatttcaggcacaagcgaagtatgggtctgacgctggccgaagcggagctgacccgactg
gacactgagagaatgagggaccgggtggctctggagaaagagcgatcttgtgcagaacac
atcatccctatgatagagcaagtactgttgacgccacaagccacagaggaagataagtgt
agcactattcagtttgtcatactgtcgtatatgaagcagttgggcgtaaaagtgaagcac
aagcccaagctaatgaatcttttccctaagataaagagtataaagagtataaaggtggag
aaagacggaagcgaggagaaacctaaaaataaacgaattcatgtcttccttccaagacga
ccgagcaggactgatgccttcttacagaacaaggttccggagctaaggcagcgtcttcag
aagcctcagctgccgttgggtgtaggggagcagggagatgcgtcatcaccccctgtgcgg
ggcagtcagtccagtgagggctcagatggcatcaatgccccggtcatgtcacctccttac
agtgccccagcgacacagggcacagacagcaactatcgagagtctgacactggtgcagtt
ccatcttcagcattgcccagattgggagatggcatcaattcggcagacttgcaggactcg
tatcctgtaaccactcattttgacttcagcccctgtaccttagagcatctacaggaggag
gagtctgagatagacaagacgcaagacactggcacacccaggcctgacaggagaaggatg
gagctgttgggttctggagaagttcaaagtgaagatgatcagggtgctgaggctgagctg
gagcatcccaactggcagacgctggtgagcagagacgttctgtccacactcacccctcag
gaaatcaagagacaggaggtcatcaacgagctgttttacactgagagagcacatgttagg
atgctgaaggttctggataacgtcttttatcagccgctgaatagagagaccatccttcct
ccagcagacattaaaaacatcttcaccaatctcgaggagatcgtacagtttcacgtgtca
ttaactgaacaaatgacagccgttcgaaagaagaatgaggcagccgtcattgactcgata
ggagatgaactgctgtcctggttcagtggggaggaggaggagaagatcaagagagcagcc
ggcacatattgcagcaatcaaccgtttgccctggagctcatcaaaagcaaacagaagaaa
gaccaacgcttcaactctttcatacaggaggcagagagtaaccggcattgccggaggttg
cagttgaaggacatcattccagtggagacacagagacttacaaagtatccgcttctgctg
gagaacatcgccagatacacagaggacccagaggagagaagtaaagtgaaacatgctggc
gattgctgtcgaaagattctcagtcacgtcaaccaggaggtgaaagaagccgaaaacaaa
cagaggttggaggactaccagaggcgtttggacctgtcctcactgaagcagagcgagaac
cccatgatcgctgagtttaagagcctggacttgactaagagaaagatggtgcatgaagga
cctctatcctggaaagtcaacaaagacaaaactattgagctatacacgctgttgctggag
gatatcttggtgctacttcaaaggcaagatgagaagttgatcttaaagtgtcacagcaag
aatctggcaggcacagcagagaccaaacacatcttcagccccatcatcaaactcagcact
gtgatggtgcgctcagtcgccaccgataacaggtcgttctttgtgctgtctatgtctaat
aatgaagcccagatctacgagctgatggctcagaccgtatctgagcagaggacgtggcag
tgtcaaatcacacatcgagccgattgcatgaagaccaaattgcacagcatcattccatta
cctcagaccgatggtgaacgtgaagaagttgagttgattaattctggtgttcagaaactc
aacaaagactccgagcccattcctttggggaatatccagcctccagaaaaagaaagcact
gaggtcacgcaaacccctccagcgagcaccaacccgttcgagaccaaatccgatgaggaa
gaggaggaagaaagctcattacaagatcagggtgaaggtgaagatgatgaagcattcgtg
gtggctgatctgaatgacagacttatgtttctgaagcaacgctccaggcaaggcatcgcc
atagatgaggatgaggccgaggccttcgaacttcagccactccgagctgatgaagctctc
agaacattggcggcactgagacagctgctgatcaggcacatttccaatcaggaggaccca
gacagagatatcgagaaaagacaggcacaggaggacggacagaggacgaattctcggcag
gggccagaggacagcactgcaattgggtccttggttgagaatggctcagagagagacgag
acaagacgacagaaccctccagaaccgcctcctggagacacggggttctttgagacgtcc
gaggattgcggtagttacatggtgctggagggttacggaggttcggttgaaagctgcaca
gatgatgatgtgcatggcagtaatggtgagccagtggctggaggagactctggcattgac
ttgaagaagctcctctcttcttcatcccagagcagcaaaggaccacacatcaacagacag
atcatgactcacatacgtctactgcacgccaacctgcagcacctgaaggatatagaaatt
aagtataacctagtacgccaaaggctatcagaggaaacagctactgacacagaagaaaac
aaagataaaagttag
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