Paramisgurnus dabryanus (large-scale loach): 135774233
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Entry
135774233 CDS
T10799
Symbol
prpf4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
pdab Paramisgurnus dabryanus (large-scale loach)
Pathway
pdab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pdab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135774233 (prpf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pdab03041
]
135774233 (prpf4)
Spliceosome [BR:
pdab03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
135774233 (prpf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40_Prp19
WD40
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
WD40_Gbeta
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
Beta-prop_WDR36-Utp21_1st
ANAPC4_WD40
Beta-prop_Aladin
Beta-prop_EML
WD40_MABP1-WDR62_1st
PRP4
WDR90_beta-prop_4th
NBCH_WD40
Beta-prop_EIPR1
Beta-prop_DCAF4
Beta-prop_TEP1_C
Beta-prop_SCAP
Beta-prop_WDR41
Beta-prop_Vps41
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
WD40_like
WD_LRWD1
Beta-prop_DCAF12
Beta-prop_WDR35_TULP_N
Beta-prop_WDR11_1st
Motif
Other DBs
NCBI-GeneID:
135774233
NCBI-ProteinID:
XP_065140264
LinkDB
All DBs
Position
5:complement(40739598..40749294)
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AA seq
507 aa
AA seq
DB search
MSDEDEAPVVKKSRIFYGSLEDKERERLSREGTTSTAKDAVKAGIDAGNINISSGEFMEM
EDRISDRQAEVLAEFERRKRARQITVSTDDVEVKACLRSLGEPITLFGEGPAERRERLRN
FLSVVGPDALKKSKKEEDKGKRSQDEYQQTWYHEGPSSLKEARLWLAKYSLPRAVQRLDD
ARALKEVPESIRTVRQQELHKNLRNLNNFCSQIGDDRPISYCQFSPNSKMLVTASWSGLC
KLWKVPDCTLVRTLRGHNTNVGAISFHPQATLTLEESDVNMASCAADGTVKLWSLDSDEP
VADIEGHSMRVARVAWHPSGRFLGTTCYDNSWRLWDLEVQEEILHQEGHSKGVHDLHFHP
DGSLAGTGGLDSFARVWDLRTGRCVMFLEGHLKEIYSIDFSPNGYNVATGSGDNTCKVWD
LRQRRCIYTIPAHQNLVSTVKFQPTDGHYLLSGAYDNTAKVWTHPGWSPLKTLAGHEGKV
MGLDISPDGQLIATCSYDRTFKLWMSE
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atgtcggatgaagacgaagccccggttgtgaaaaagtccaggatcttctatggaagcctc
gaagataaagaaagagagcgtcttagccgtgaaggaacaacatccactgctaaagatgcc
gttaaagctggcattgatgctggaaatattaatatctccagcggcgagttcatggaaatg
gaggaccgcataagtgatcgacaggctgaagtattggcagagtttgagcgtagaaagcga
gccagacagatcactgtctccactgatgatgtggaggtcaaggcctgtctccgatctctc
ggcgagccaatcacgctgtttggggaggggccagcggagagacgggagagattaaggaat
tttctttcggtggttggtcctgacgccttgaaaaaatcaaagaaagaagaggataaagga
aaacgcagtcaagatgaatatcagcagacgtggtaccatgaaggcccttcatctttaaaa
gaggcacgtctatggttggccaagtattcactgcccagagcagtgcagaggttagatgat
gcaagagccctaaaggaagttccagaatctatacgaacagtccgacaacaagagcttcac
aagaaccttaggaatctaaataacttctgcagccaaattggcgatgaccgtccaatatcc
tactgccagtttagccccaactctaagatgctggtgacggcatcttggagtggtttgtgt
aaattgtggaaagtcccagattgtacactcgttcgcactttaaggggtcacaataccaac
gtaggagccattagctttcatcctcaagccacactgacgctggaggagtcagatgtcaat
atggcctcctgtgctgcggacggcactgttaaactgtggagtttagacagtgatgagcct
gtagcagacatcgaagggcactccatgagggtggcacgagtggcctggcacccatccgga
cggtttttgggcacaacttgctatgataactcatggcggctgtgggatcttgaagttcaa
gaagaaattctgcatcaggagggtcacagtaaaggagtccacgatcttcacttccacccg
gatggctcgctcgcaggaactggtggtctggactcattcgctcgtgtctgggacctgcgg
actggccgttgcgtgatgttcctggagggtcatctcaaagagatatacagcatcgacttc
tcaccaaacggctacaatgtggccacaggaagtggagataacacctgtaaagtgtgggac
cttcggcagaggaggtgtatatacacgattcccgcccatcaaaacctcgtgtcgaccgtc
aagttccagcctacggatgggcattacttgctgtctggtgcgtatgacaacacagccaag
gtgtggacacatccaggctggtctcctctgaagactctagcggggcatgagggcaaggtc
atggggcttgacatttcacccgatggacagctcattgcgacctgttcctacgacagaacc
ttcaaactatggatgtcagaatga
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integrated database retrieval system
