Paramisgurnus dabryanus (large-scale loach): 135774236
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Entry
135774236 CDS
T10799
Symbol
sympk
Name
(RefSeq) symplekin isoform X1
KO
K06100
symplekin
Organism
pdab Paramisgurnus dabryanus (large-scale loach)
Pathway
pdab03015
mRNA surveillance pathway
pdab04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
pdab00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
135774236 (sympk)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
135774236 (sympk)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pdab03021
]
135774236 (sympk)
03019 Messenger RNA biogenesis [BR:
pdab03019
]
135774236 (sympk)
Transcription machinery [BR:
pdab03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
135774236 (sympk)
Messenger RNA biogenesis [BR:
pdab03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
135774236 (sympk)
U7-dependent histone pre-mRNA processing factors
135774236 (sympk)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
PDS5
Adaptin_N
Cohesin_HEAT
Motif
Other DBs
NCBI-GeneID:
135774236
NCBI-ProteinID:
XP_065140266
LinkDB
All DBs
Position
5:40995624..41016080
Genome browser
AA seq
1227 aa
AA seq
DB search
MASDVGEQSHGGMDEDKALDMTTSEKVVELLNQASLISTEEKLVILKQVQELIINKDPSL
LDNFLDEIIAFQTDKSIEVRKFVIGFIEEACKRDNELLLRLIANLNMLMRDESVNVVKKA
ILTLTHLYKVALQWLVRTKTVSDMEEACWDMVTRMKDDVLALLDSDNDGVRTHAIKFTES
LIITLSPRTPDSDTPKKHEGDISLDKIPKDHAYIRYDTLSEEGKSALDQLLKFMVHPAIS
SINLTTALGSLATLARQRPMFMSEVVQAYEMLHANLPPTLAKSQVSSVRKNLKLHLVSVL
KHPSSVDFHGQISTLLQDLGMSQNDITRCTPAPQKRRHHEPYVEGKRIKMETALVEDDED
KEEQAPVITPKPSSSVGTQSALDLTAEFLFPLLSPENVANLVLISMVYLPEVMPASFQAT
YTPVESAGTEAQIKHLARLMATQMTAAGLGPGLEMCKARDEEVKGEDEGSSEISSKDPLI
VRKFSAVSLGQAISVVGAYKSPVTEETPQIKKVPEPILPTTQPKAPGTSGRKKVFKLADV
VQPFSEAQIEKLIDMSVNRILQSERAIAQSGMSHVRMKLLARLVTQFEGGMKNDLLQFIL
DDMRGRCELAFSLLYHEYNEYLNQQPSGSLDSYEQCLFTLLTGLQEKPEQKDGLFTKLVL
EAPVITDSALEVIQRYCEDESRVYLGMSTLKDLILKRPSRQYQYLNVLLNLSCHEKEKVR
TTALSFIKRMYEKKHLKDCIEKFALTYMQFLVHPNPPSLLFGAAEDTEVAGSWTEETVRQ
CLYLYLSLLPLNHCLVHELAAVYTEAIADIKRSVLRVIEQPIRGMGMSSPDLLLLVENCP
KGAETLITRCLHILTDKVPPSPELVERVRDLYHKRVPDVRFLIPVINGLEKHEVIQALPK
LIKLNPIVVKEVFNRLLGTQHSEGSSSMSPLTPAELLIALHNIDSSKCDMKSIIKATNLC
FGEKNVYTSEVLAVVMQQLMEQTPLPILLMRTVIQSLTMYPRLAGFVMNILARLILKQVW
KYPKVWEGFVKCCQRTKPQSYNVLLQLPPAQLASVFERCPEMRDPLLQHVHSFTPHQQAH
IPSSIIAILEANIRKLEPEPEPQLPEVIEERQIQVPKHISAPVPQQEPPAPAPIAFTEPV
PEPIPSRREEVEEPMEQAETAHAFPVVTSEPALQQMEVSEDATQSSTVTEKVDEPMEDST
ASEVADQTKVVPEDADTEPEPETSNVD
NT seq
3684 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcagatgtgggagaacagtcgcatggtggcatggatgaagataaagcccttgac
atgactaccagtgagaaggtagtggaattactaaaccaggcttccctcatctcaacagaa
gaaaaacttgtcattctcaaacaggtgcaggaattgatcatcaacaaagacccttcatta
cttgataactttctggatgaaattattgcatttcagacagacaagtcaattgaggtgcga
aagtttgttatcggctttattgaggaggcctgtaaaagggataatgagcttcttctgcgg
ctgattgccaatttgaatatgctaatgagagacgagagtgtaaatgtggtgaaaaaggca
attctgacccttacacacctatataaagttgctttacagtggctggtgcgtaccaagacc
gtctcagacatggaggaagcatgctgggatatggtaactcggatgaaagacgatgtcctg
gcattgctcgattctgacaacgatggggtccgcactcacgccatcaaattcacagagtcc
ctcattatcactctgtcaccacggacacctgactccgacactcccaagaagcacgagggg
gacatcagcctggacaaaattcccaaagatcacgcgtatatacgttatgacaccttaagc
gaggagggtaagtctgctctggatcagctgttaaagttcatggttcatcccgccatctcc
agcattaatctgaccactgcacttggatcactggctacgttggccagacagcggcccatg
ttcatgtctgaggtggtgcaggcctatgaaatgctacatgctaacctgccaccaactctg
gccaaatctcaggtcagtagcgtgcgtaagaacctgaagctgcacctggtctcggtgctg
aagcaccccagcagtgtggacttccacggtcagatttccactctgctgcaggatctcggc
atgtctcagaacgacatcacccgctgcacccctgctccacagaaaagacgccaccatgag
ccttatgtagagggcaagaggatcaagatggagactgctttagtggaggatgatgaagat
aaggaggaacaagcaccggtcatcaccccaaaaccctcctcctccgttggcacccaatca
gccctcgatctcactgctgagttcctgttccccctcctttccccagagaacgtggctaac
ctggtactcattagtatggtctacctgcctgaagtgatgccagcctctttccaggccacg
tacacgcctgtagagtctgcgggtactgaagctcaaattaaacatttagccaggttaatg
gccacacagatgactgcggctggtttgggaccaggtttggaaatgtgtaaggctcgggat
gaagaggtgaagggggaggacgaaggatcgagtgagatcagctccaaagaccctctcatc
gtccgcaagttctctgcggtttccctcggtcaggccatctcagtggtgggggcctacaag
agccctgtcactgaggagacacctcaaatcaagaaagttcctgaacctatactgcccaca
acacagccaaaagctcctggcaccagtggcagaaagaaggtgttcaaattggcagacgtc
gtgcagccgttctcagaggctcagatagagaaactaatcgacatgtccgtcaatagaatc
ctccaatcggaaagagccattgcacagagcggaatgtctcatgttcgtatgaagctgctt
gctcggttggtgacccaatttgaaggagggatgaaaaatgacttgttacagtttatcctg
gatgacatgcggggtagatgtgaactggccttttctctgctgtaccacgagtacaatgaa
tacctaaatcagcagccctccggctctctggacagctacgagcagtgtctgtttacactt
ctgaccggcctgcaggagaaacctgagcaaaaagacgggcttttcaccaagcttgttctg
gaggctccagtcatcacagactcggccctggaggtgattcaacgctactgtgaagatgag
tcgcgcgtatacctgggcatgtccaccttgaaggatctcattctgaaacgcccgtccagg
cagtaccagtacctcaatgttcttctgaacctcagctgtcacgaaaaagaaaaggtgcga
accaccgctcttagcttcatcaagcgcatgtatgagaagaaacacctgaaggactgtatt
gagaagtttgctcttacgtacatgcagttcctggtccacccaaacccaccctctcttctg
tttggagcagcggaggacacagaggtggcgggttcttggacggaggaaaccgtgcggcag
tgtctctatctgtatctctccctgttacccctcaaccattgtctggttcatgagctggca
gctgtgtacaccgaggccatcgctgacatcaaacgaagtgtgctgcgagtcattgaacag
cctataagaggcatggggatgagttctcctgacctgctgctgctggttgaaaattgtcct
aaaggagcagagacactgatcactcgctgtctacacatactcactgataaagtgcctcca
tctcctgaattggtggagagggttcgggatctttatcataaacgagtccctgatgttcgt
tttctcattccggtcatcaatggcctggagaagcatgaagtgatccaggctttacccaaa
ctcatcaagcttaatccaatcgtagtcaaggaggtgttcaacagacttctgggcactcaa
cacagtgaaggcagttcctccatgtctccgctcactcctgctgaactcctcatcgccttg
cacaacattgactcctccaagtgtgacatgaagtcaatcatcaaagccaccaacctgtgc
tttggagagaagaatgtgtacacgtcagaagttctggcggtggtgatgcagcagttaatg
gagcagacgcctctccctatactgctgatgcgtacggtcattcagtccctcaccatgtac
cctcgcctggccggtttcgtcatgaacatcctggcccggctcatccttaagcaagtgtgg
aagtatcccaaggtgtgggagggctttgttaaatgctgccagcgtaccaaaccccaatct
tacaacgtgctcctccagctacctcctgcacaactggctagtgtgtttgagcgttgtcca
gagatgagagacccgctcctacagcatgtgcactcctttacgcctcaccaacaagcccac
attccatcctctataattgctattctggaggccaacatcagaaagctggagccagaacca
gaaccgcaacttccagaagtaatagaagagagacagattcaagtaccaaaacacatttca
gcaccagtaccacaacaagaaccgccagccccggcacccatagcatttacagaaccagtg
ccggaaccgatcccatccagaagggaagaagtcgaagaacccatggagcaggcagagaca
gcccatgcttttcctgtggttacatctgaaccagcattgcagcagatggaggtatctgaa
gatgcaacgcagtccagcactgtcacagagaaggtggatgaacccatggaagattcgacg
gctagtgaggtggctgaccaaacaaaagttgtgcccgaggacgctgacacagaacctgaa
cccgaaacaagcaatgtggattaa
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integrated database retrieval system
